[Freesurfer] Assistant Professor Position in Cognitive Neurosciences of Language - University of Geneva Switzerland

2021-04-09 Thread Narly Golestani
External Email - Use Caution

Dear all,

An Assistant Professor Position in Cognitive Neuroscience of Language is 
available at the University of Geneva, Switzerland. The position will be in the 
Psychology section of the Faculty of Psychology and Education Science 
https://secure-web.cisco.com/1Hn_XNE0p1RKSeisul8uuWPjqFsyEgiu5lMCeaHhECmbSVMsO3GdqHp5g4gvT95CH-scqi-tRiTmJGvP9ullwdOO5b-Xk3uVScM_Dx-8yhlQjqZGnWBza56R8rxF8ccQXhK83-Wgcz8H63tcqAdVqLxmMRj-3WJWlaF5fhXbHMxgmCTBiRJB6s27RazGMr-4lhyeczTU0GFJ94vLWSvUF9jhc7JDG4MqQLZUQBU0gST6R1EWy5xnWZfkqgS1OUbJJqP6fGGbnVPeHzsSh6JFb1A/https%3A%2F%2Fwww.unige.ch%2Ffapse%2F,
 with access to Campus Biotech Facilities 
"https://secure-web.cisco.com/1T_pbFAMOQE6rzfyb3YUonEwo8892rX5KOMFJx0YbtN0GPGv7o29MnSsEmRcCFoeBI7iEgnM7yF7Q9g_zvJYVt-TFb-z90vA6s9nFNR3_5S7IFx3BGBc74bw-hPrTuWwI_FsAQKC5-yhsXPGAP5NXSfY-UfR_bYonJDX0zdekFOF9S8_0U46tCFoWViXFhiFdnl1jBIZfmrxmkTgbLmEPxwb3vE1G3yjiQ2DeuFSxxutE3lCeOmGoauAXmq1CV6TlBe-qJeBlTQunebf3-9CYiA/https%3A%2F%2Fwww.campusbiotech.ch%2Fen%2Fnode%2F320";.

This position is opened in the context of the NCCR (National Center of Research 
Competence) "Evolving Language" - 
http://secure-web.cisco.com/1EWS_y03OVjFu46pudQ4_4N5frGWZHwtV250Dr-BazQ5r_fHyiCD5F4zsXjYUEywEqplX8yP2R00h4OygcUZYRO6WO73UPPDSW2tmIbpAjc64AXbbF6pLgwqQPgwM9qkRZdzNe45l1gPXwyaPV_Y5-csbOeyz0sdKSxyyRsUcbwq3LkM8WhxvMTrQkoYe1dRsw9_tFV8Iq1zdPznkIFqBNuAJwgPy4YjZVs3T8uGDl3wBRf-oFeZ7IXfcrllrnLvsPXSToCXSqOdkYPb_VgW7Hw/http%3A%2F%2Fwww.snf.ch%2Fen%2FresearchinFocus%2Fnccr%2Fevolving-language%2FPages%2Fdefault.aspx.

The whole application process can be carried in English. It is required that 
the successful candidate acquire a working command of French within the first 
two years in the position.

The  application deadline is on May 19th, 2021 - please see 
https://secure-web.cisco.com/1CDMYP8n3cNlL1DfRxXDUt3T2Rps02kJ9kWAYpxlTVcYAoElpXLaJsI6VcO3UNimQIVpUK8VxeNOwkW72VU2lzzaXayhWTHLS6zajaLjLMZyeDA_nwai3hAAHkikLR_YcCpNG3dS0o0g6BE5uIOm9Kc1gIy5Tdaq9_c6anDirbzwtcHfWxevVIs1n40CmeXnYQRffggHwOv1nMRgDrRkk3ypUKSKM1PCES7-sdjmPpxGuOmuzvRlgDUjqc4MiJgcb86uTosAqJkjKHtSw1VLBJg/https%3A%2F%2Fjobs.unige.ch%2Fwww%2Fwd_portal.show_job%3Fp_web_site_id%3D1%26p_web_page_id%3D50170
 for more information.

We would be most thankful if you could distribute widely.

Thanks in advance, and best wishes,
Narly Golestani.

-
Brain and Language Lab
Prof. Narly GOLESTANI
Department of Psychology
Campus Biotech
9 Chemin des Mines,
1202 Genève
+41 22 379 53 52
<https://secure-web.cisco.com/1dinoEmfX1o7ZFkPOcSggpavzSzXiCY2uRru-c5xw5IuM6m3fVpPOCVY9487l4wFfN8UvEEQK_wr6R2ATZx4u_CiRzBwkiR7d5u1DaTnjAI0G8twfDLSm6_iv70u0gWBLMn38rgeQ-52eYPhIm1ycaYAgSmCtesQ5YuAa4S5dkdTKYeJeu7TUvfpwp3Bp-t0piQ59B7qQFM3GOprjBOfNSL8RWRoBImJbdV5VzH_ovFFCWWeBERK8vUzjSu_coYWcHbHb4sgst-nLNPN68t_G4Q/https%3A%2F%2Foutlook.unige.ch%2Fowa%2Fredir.aspx%3FSURL%3D5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.%26URL%3Dhttp%253a%252f%252fwww.brainandlanguagelab.org%252f>http://secure-web.cisco.com/1y3jxPvURbRT3R3lkfnmhThYAOCwHy0AdTX2xoqOS-umHjgmUp-mhA-xxTVKyXiKkX6_WcFLFBNC1HVhcNGJ3w8M0wvbThAFqvDPvP0V8SdulxMF0aE6C9VT2OH3kaIQi_SbM9B5-MFKGCOvGlhA62a_7pAGSKIxKDIV0JEudUlykP4g2eO9EY7mcXdEonr7sMGL7FddVgOG5eol1vnj4HSylndNACLl8dFhpRzFLOiPd4ZDA2uEUzdchRt3ex-pQ8FjZBJUfmS5X6Tion-8INg/http%3A%2F%2Fwww.brainandlanguagelab.org
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[Freesurfer] PhD Position on the Brain, Language and Multilingualism

2020-07-06 Thread Narly Golestani
External Email - Use Caution

With the launch of a new ‘NCCR Evolving Language’ 
(http://www.snf.ch/SiteCollectionDocuments/nfs/Faktenblatt_NCCR_evolvinglanguage_en.pdf),
 which involves nearly 40 different research groups from a large variety of 
disciplines across Switzerland, we seek to fill a PhD position for a four-year 
project, starting in September or October 2020.


Our goal is to make progress in understanding language giftedness from 
cognitive, psychological and neural perspectives. To this end, we plan to carry 
out a set of studies involving acquisition of both behavioral measures of 
cognitive and language-related abilities (e.g. auditory/perceptual abilities, 
phonemic perception and production, inductive learning, working memory etc) and 
of brain imaging measures (fMRI and sMRI). The project will be supervised by 
Narly Golestani (University of Geneva) and Raphael Berthele (University of 
Fribourg), and will be done in collaboration with a postdoctoral fellow. Data 
will be collected with Francophone (mono- and multilingual) subjects.


Applicants should hold have a background in cognitive neuroscience or 
psychology, with solid experience in brain functional neuroimaging (ideally 
fMRI), behavioral testing and strong statistics skills. Command of the French 
and English languages is essential. Given hiring restrictions due to Covid19, 
priority will be given to European applicants, at least for now.


The NCCR places great emphasis on gender diversity and we particularly 
encourage women to apply.


Applicants may send a pdf file including a cover letter, a CV, names and 
contact information of 3 references as well as any other relevant documents to 
narly.golest...@unige.ch<mailto:narly.golest...@unige.ch> and 
raphael.berth...@unifr.ch<mailto:raphael.berth...@unifr.ch>.
Deadline for application: July 22nd 2020


-
Brain and Language Lab
Prof. Narly GOLESTANI
Department of Psychology
Campus Biotech
9 Chemin des Mines,
1202 Genève
+41 22 379 53 52
<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>http://www.brainandlanguagelab.org
https://twitter.com/brain_lang_lab
-
<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>
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[Freesurfer] Postdoc position available - computational modeling and real-time fMRI neurofeedback of language

2020-05-28 Thread Narly Golestani
External Email - Use Caution


With the launch of a new ‘NCCR Evolving Language’ 
(http://www.snf.ch/SiteCollectionDocuments/nfs/Faktenblatt_NCCR_evolvinglanguage_en.pdf),
 which involves nearly 40 different research groups from a large variety of 
disciplines across Switzerland, we seek to fill a Postdoc position for a 
four-year project starting in September 2020, or at the selected candidate’s 
earliest convenience.


Our goal is to make progress in understanding the importance of prosody in 
language processing. To this end, we plan to carry out a set of studies 
involving both computational modeling of fMRI data and real-time fMRI 
neurofeedback to understand the mechanisms whereby prosody and rhythm support 
linguistic processing per se. The computational modeling work will be an 
extension of our recent work on the neural encoding of acoustic information in 
speech sounds (https://www.ncbi.nlm.nih.gov/pubmed/31285622).


The research will be done in the group of Narly Golestani 
(www.brainandlanguagelab.org<http://www.brainandlanguagelab.org>) in Geneva, in 
collaboration with researchers in Switzerland and abroad (Elia Formisano in 
Maastricht, and Frank Scharnowski in Vienna).


Applicants should hold a degree in Biomedical Engineering, Computational 
Neuroscience, or a related field, and should have solid experience in human 
brain imaging, and ideally also in computational modelling (i.e. encoding / 
decoding) of fMRI data, real-time fMRI based neurofeedback, machine learning, 
statistics and programming.


The NCCR places great emphasis on gender diversity and we particularly 
encourage women to apply.


To apply, please send a cover letter, CV, names and contact information of 2-3 
references as well as any other relevant documents to 
narly.golest...@unige.ch<mailto:narly.golest...@unige.ch>. Feel free to contact 
me should you have any questions.

Deadline for application: June 20th 2020

-
Brain and Language Lab
Prof. Narly GOLESTANI
Department of Psychology
Campus Biotech
9 Chemin des Mines,
1202 Genève
+41 22 379 53 52
<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>http://www.brainandlanguagelab.org
https://twitter.com/brain_lang_lab
-
<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>
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[Freesurfer] PhD Position in Multilingualism/Psycholinguistics

2020-03-01 Thread Narly Golestani
External Email - Use Caution

With the launch of a new ‘NCCR Evolving Language’ 
(http://www.snf.ch/SiteCollectionDocuments/nfs/Faktenblatt_NCCR_evolvinglanguage_en.pdf),
 which involves nearly 40 different research groups from a large variety of 
disciplines across Switzerland, we seek to fill a PhD position for a four-year 
project starting in May 2020, or at the selected candidate’s convenience.


Our goal is to make progress in understanding language giftedness from 
cognitive, psychological and neural perspectives. To this end, we plan to carry 
out a set of studies involving both behavioral measures of cognitive and 
language-related abilities (e.g. auditory/perceptual abilities, phonemic 
perception and production, inductive learning, working memory etc) and brain 
imaging measures (fMRI and sMRI). The research group involves two PIs 
(Golestani, Geneva; and Berthele, Fribourg) and a postdoc. Data will be 
collected with Francophone (mono- and multilingual) subjects.


Applicants should hold an MA degree in psychology, linguistics or a related 
field (e.g. psycholinguistics, applied linguistics, multillingualism), have a 
good command French and English and have strong quantitative research and 
statistics skills. Additional mastery of German and experience with 
neuroimaging techniques would be a strong advantage.


The NCCR places great emphasis on gender diversity and we particularly 
encourage women to apply.


Applicants may send a pdf file including a cover letter, a CV, names and 
contact information of 2-3 references as well as any other relevant documents 
to narly.golest...@unige.ch<mailto:narly.golest...@unige.ch> and 
raphael.berth...@unifr.ch<mailto:raphael.berth...@unifr.ch>.
Deadline for application: March 31 2020


-
Brain and Language Lab
Prof. Narly GOLESTANI
Department of Psychology
Campus Biotech
9 Chemin des Mines,
1202 Genève
+41 22 379 53 52
<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>http://www.brainandlanguagelab.org
https://twitter.com/brain_lang_lab
-
<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>
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[Freesurfer] Postdoc position available - computational modeling and real-time fMRI neurofeedback of language

2020-03-01 Thread Narly Golestani
External Email - Use Caution


With the launch of a new ‘NCCR Evolving Language’ 
(http://www.snf.ch/SiteCollectionDocuments/nfs/Faktenblatt_NCCR_evolvinglanguage_en.pdf),
 which involves nearly 40 different research groups from a large variety of 
disciplines across Switzerland, we seek to fill a Postdoc position for a 
four-year project starting in May 2020, or at the selected candidate’s earliest 
convenience.


Our goal is to make progress in understanding the importance of prosody in 
language processing. To this end, we plan to carry out a set of studies 
involving both computational modeling of fMRI data and real-time fMRI 
neurofeedback to understand the mechanisms whereby prosody and rhythm support 
linguistic processing per se. The computational modeling work will be an 
extension of our recent work on the neural encoding of acoustic information in 
speech sounds (https://www.ncbi.nlm.nih.gov/pubmed/31285622).


The research will be done in the group of Narly Golestani 
(www.brainandlanguagelab.org<http://www.brainandlanguagelab.org>) in Geneva, in 
collaboration with researchers in Switzerland and abroad (Elia Formisano in 
Maastricht, and Frank Scharnowski in Vienna).


Applicants should hold a degree in Biomedical Engineering, Computational 
Neuroscience, or a related field, and should have solid experience in human 
brain imaging, and ideally also in computational modelling (i.e. encoding / 
decoding) of fMRI data, real-time fMRI based neurofeedback, machine learning, 
statistics and programming.


The NCCR places great emphasis on gender diversity and we particularly 
encourage women to apply.


To apply, please send a cover letter, CV, names and contact information of 2-3 
references as well as any other relevant documents to 
narly.golest...@unige.ch<mailto:narly.golest...@unige.ch>. Feel free to contact 
me should you have any questions.

Deadline for application: March 15th 2020



-
Brain and Language Lab
Prof. Narly GOLESTANI
Department of Psychology
Campus Biotech
9 Chemin des Mines,
1202 Genève
+41 22 379 53 52
<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>http://www.brainandlanguagelab.org
https://twitter.com/brain_lang_lab
-
<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>
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[Freesurfer] PhD & Postdoc positions – computational modeling and real-time fMRI neurofeedback of language, bilingualism and dyslexia

2019-10-10 Thread Narly Golestani
External Email - Use Caution

PhD & Postdoc positions – computational modeling and real-time fMRI 
neurofeedback of language, bilingualism and dyslexia

PhD and Postdoc positions are available at the Brain and Language Lab 
(www.brainandlanguagelab.org<http://www.brainandlanguagelab.org>) at the 
University of Geneva. The PhD position is for 3-4 years, and the postdoc 
position is for up to 4 years, and salary will be commensurate with experience. 
 Several projects will be done in collaborations with Maastricht University and 
with the University of Vienna.

Applicants should have a strong interest in human brain imaging, and in 
language function and dysfunction, and should have one of (or a combination of) 
the following profiles:

1. Candidates with a degree in Biomedical Engineering, Computational 
Neuroscience, or a related field, and with solid experience in computational 
modelling (i.e. encoding / decoding) of fMRI data, machine learning, statistics 
and programming. Projects will include extensions of our recent work on the 
neural encoding of acoustic information in speech sounds 
(https://www.ncbi.nlm.nih.gov/pubmed/31285622) to higher levels of language 
processing.

2. Candidates with a degree in Cognitive Neuroscience, Biomedical Engineering 
and/or Psychology, with solid experience in the acquisition and analysis of 
brain functional (and structural) imaging data. Projects will include real-time 
fMRI neurofeedback training studies, focusing on different levels/aspects of 
language learning.

Candidates for either position (depending on experience) will also have the 
opportunity to become involved in the analysis of data from a 7T myelin mapping 
(R1) study.

The positions are available immediately, and applications will be considered 
until the position is filled. Applicants should send me their CV, a statement 
of research interests, and the names and contact information for 2-3 
references, at narly.golest...@unige.ch<mailto:narly.golest...@unige.ch>.

-----
Prof. Narly Golestani
Brain and Language Lab
Department of Psychology
Campus Biotech
9 Chemin des Mines,
1202 Genève
+41 22 379 53 52
<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>http://www.brainandlanguagelab.org
https://twitter.com/brain_lang_lab
-
<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>
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[Freesurfer] Post-Doctoral position in brain imaging – University of Geneva {Disarmed}

2015-11-03 Thread Narly Golestani
?Applications are invited for a Post-Doctoral position in the Brain and 
Language Lab (www.brainandlanguagelab.org<http://www.brainandlanguagelab.org/>) 
at the University of Geneva.  The position is for 2 years (or more), and will 
be at the new Biotech Campus (http://www.campusbiotech.ch/en/).


Candidates should have a degree in Psychology and/or Cognitive Neuroscience, 
and should have a solid background in statistics and in the analysis of 
functional magnetic resonance imaging data. The projects will include brain 
imaging and behavioural studies on multilingualism and expertise, with a focus 
on executive skills, attention and statistical/language learning.


The salary is competitive, starting salary at ~ 69, 000 CHF/year (~ 81, 000 
CHF/year as of August 2016) depending on experience.


The position is available immediately, and applications will be considered 
until the position is filled.  Informal inquiries can be addressed to Narly 
Golestani (narly.golest...@unige.ch).   Applications including a CV, a 
statement of research interests, and the names and full contact details of 
three referees should be sent to: 
narly.golest...@unige.ch<mailto:narly.golest...@unige.ch>.

?-
Brain and Language Lab
Department of Clinical Neuroscience
Biotech Campus
9 Chemin des Mines,
1202 Genève
+41 22 379 53 52
http://www.brainandlanguagelab.org<https://outlook.unige.ch/owa/redir.aspx?SURL=5WTo-p-J-W9FrDydU-0WU4PdMytUGs6FDVYEZcx1DdqyagSve7_SCGgAdAB0AHAAOgAvAC8AdwB3AHcALgBiAHIAYQBpAG4AYQBuAGQAbABhAG4AZwB1AGEAZwBlAGwAYQBiAC4AbwByAGcALwA.&URL=http%3a%2f%2fwww.brainandlanguagelab.org%2f>
-
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[Freesurfer] Two Post-Doctoral positions in brain imaging – University of Geneva

2015-08-27 Thread Narly Golestani

Applications are invited for two Post-Doctoral positions in the Brain and 
Language Lab (www.brainandlanguagelab.org<http://www.brainandlanguagelab.org>) 
at the University of Geneva.  The positions are both are for 2.5 years, and 
will be at the new Biotech Campus (http://www.campusbiotech.ch/en/).

1. For the first position, candidates should have a degree in Cognitive 
Neuroscience, Biomedical Engineering, Computational Neuroscience or a related 
field, and should have solid experience in brain imaging data analysis, 
computational modelling, pattern recognition, machine learning, statistics and 
programming. The projects will involve the use and development of computational 
morphometry and of computational modeling to study auditory cortex structure 
and function in healthy individuals, in experts and in individuals with 
dyslexia.

2. For the second position, candidates should have a background in Psychology 
and/or Cognitive Neuroscience, and should have solid experience in functional 
and structural brain imaging data analysis. The projects will include brain 
imaging and behavioural studies on multilingualism and expertise, with a focus 
on executive skills and statistical learning.

The salary is competitive, starting salary at 68, 964 CHF/year or more 
depending on experience.

The positions are available immediately, and applications will be considered 
until the position is filled.  Informal inquiries can be addressed to Narly 
Golestani (narly.golest...@unige.ch).   Applications including a CV, a 
statement of research interests, and the names and full contact details of 
three referees should be sent to: 
narly.golest...@unige.ch<mailto:narly.golest...@unige.ch>.
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Re: [Freesurfer] Auditory cortex ROIs Freesurfer versions 5.0-5.3

2015-04-21 Thread Narly Golestani

Dear Bruce,

Thanks for your answer. Did the surface-based registration procedure change 
between each successive freesurfer version 5, 5.1, 5.2 and 5.3 or did the main 
(or bigger) changes occur between 2 specific versions? If so, which please?

Many thanks and best,
Narly.
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[Freesurfer] Auditory cortex ROIs Freesurfer versions 5.0-5.3

2015-04-20 Thread Narly Golestani

Dear all,

I’d like to know if there are any differences in the way that the auditory 
cortex regions of interest are segmented between freesurfer versions 5.0 to 
5.3. Do all version provide output for the below three ROIs, and are the 
atlases used for this (both the default and the Destrieux) unchanged across 
these freesurfer versions?

lh.G_temp_sup-G_T_transv.label (33)
lh.S_temporal_transverse.label (74)
lh.G_temp_sup-Plan_tempo.label (36)

Many thanks and best wishes,
Narly.
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[Freesurfer] Small volume correction in qdec

2014-05-16 Thread Narly Golestani

Dear all,

I would like to follow up on several posts that have already been made 
regarding how to restrict the search volume (i.e. do a small volume correction) 
to a particular region (e.g. to a freesurfer label) within qdec.  As far as I 
can see this query was not answered on the list: 
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg13770.html

How exactly can this be implemented in qdec please?

Thanks in advance and best wishes,
Narly.
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[Freesurfer] bug in surface-based area and volume, and use of total brain volume as a covariate

2014-03-19 Thread Narly Golestani

 >> why would one control for total brain volume in doing vertex-based
analyses when the vertex-based measures are computed in standard space?

>The vertex-based measures are computed in individual space, not standard
>space
>doug

Dear Doug, 

I would like to know at what stage the measures computed in individual space 
are normalised, if at all, in order to make comparisons of data across 
participants (e.g. in qdec) meaningful. Differences in the relative position of 
a particular structure across participants will make it difficult if not 
impossible to examine effects at the group level. If the vertex-wise data is in 
individual space, then I’m not sure that I understand how using total brain 
volume as a covariate would solve the above problem. I would greatly appreciate 
any clarifications that you might have.

Best wishes,
Narly.

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Re: [Freesurfer] FW: bug in surface-based area and volume, and use of total brain volume as a covariate

2014-03-18 Thread Narly Golestani

 >> why would one control for total brain volume in doing vertex-based
analyses when the vertex-based measures are computed in standard space?

>The vertex-based measures are computed in individual space, not standard
>space
>doug

Many thanks Doug, 
Best wishes, 
Narly.

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[Freesurfer] FW: bug in surface-based area and volume, and use of total brain volume as a covariate

2014-03-17 Thread Narly Golestani
Dear Doug,

Many thanks for your answers.

> 3. The bug was related to how the measures were converted to standard
> space - I?d like to therefore confirm that when doing
> surface/vertex-based analyses, it is not necessary to use total brain
> volume as a covariate (whereas it is for ROI-based analyses).
>
This question has nothing to do with the bug. People generally use ICV
or total brain volume when exploring cortical volume or surface area,
but it is inappropriate for thicknss studies
doug
>

Regarding the last point (which indeed has nothing to do with the bug, sorry 
for having given the impression that I thought that it did), why would one 
control for total brain volume in doing vertex-based analyses when the 
vertex-based measures are computed in standard space? I realize that this has 
to be done for ROI analyses since these measures are in native space.

Thanks again, and best,
Narly.
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[Freesurfer] bug in surface-based area and volume, and use of total brain volume as a covariate

2014-03-16 Thread Narly Golestani

Dear all,

Related to the bug that was reported in 2011 (see 
http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg19821.html) 
with the way that surface-based volumes and areas were calculated in Freesurfer 
versions 5.1 and earlier, I’d like to confirm that region-of-interest measures 
obtained using those earlier versions (e.g. when exporting the volume / surface 
area to tables using aparcstats2table) were unaffected by this bug (i.e. 
rerunning qcache should not change ROI-based results).

2. I’d like to also confirm that otherwise, for vertex-based analyses, it 
should be sufficient to run ‘recon-all subject –qcache’ using a more recent 
version of freesurfer in order to obtain accurate measures for data that was 
originally processed using 'recon-all –all' with an earlier version of 
freesurfer (I have data that was originally processed with version 4.4 and 
other data that was processed with version 5.1 that I would like to now examine 
in a surface-based manner).

3. The bug was related to how the measures were converted to standard space - 
I’d like to therefore confirm that when doing surface/vertex-based analyses, it 
is not necessary to use total brain volume as a covariate (whereas it is for 
ROI-based analyses).

Many thanks, and all the best,
Narly.
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[Freesurfer] Post-Doctoral position in brain imaging and computational morphometry – University of Geneva

2013-05-29 Thread Narly Golestani

Applications are invited for a funded Post-Doctoral position in the newly 
established Brain and Language Lab at the Department of Clinical Neuroscience 
at the University of Geneva, in collaboration with the Swiss Institute of 
Technology (EPFL) in Lausanne, Switzerland.  Projects will include the 
development of new data-driven computational morphometry methods for analysis 
of structural magnetic resonance imaging (MRI) data, and application of these 
to large datasets in the context of normal variability, disease, and expertise. 
The work will be supervised by Narly Golestani and Dimitri Van De Ville.

Candidates should have a degree in Biomedical Engineering, Computational 
Neuroscience, or a related field with a strong mathematical and computational 
background. Ideally they should have experience in brain image analysis, 
pattern recognition, machine learning, statistics as well as excellent 
programming skills.

We offer a competitive starting salary of 68, 964 CHF/year, or more depending 
on experience.

The position is available immediately, and applications will be considered 
until the position is filled.  Informal inquiries can be addressed to Narly 
Golestani (narly.golest...@unige.ch).   Applications including a CV, a 
statement of research interests, and the names and full contact details of 
three referees should be sent to: narly.golest...@unige.ch.

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[Freesurfer] Post-Doctoral position in brain imaging and computational morphometry – University of Geneva

2013-02-12 Thread Narly Golestani

Post-Doctoral applications are invited in the newly established Brain and 
Language Lab at the Department of Clinical Neuroscience at the University of 
Geneva, in collaboration with the Swiss Institute of Technology (EPFL) in 
Lausanne, Switzerland.  Projects will include the development of new 
data-driven computational morphometry methods for analysis of structural 
magnetic resonance imaging (MRI) data, and application of these to large 
datasets in the context of normal variability, disease, and expertise.

Candidates should have a degree in Biomedical Engineering, Computational 
Neuroscience, or a related field with a strong mathematical and computational 
background. Ideally they should have experience in brain image analysis, 
pattern recognition, machine learning, statistics as well as excellent 
programming skills.

We offer a competitive starting salary of 68, 964 CHF/year, or more depending 
on experience.

The position is available immediately, and applications will be considered 
until the position is filled.  Informal inquiries can be addressed to Narly 
Golestani (narly.golest...@unige.ch).   Applications including a CV, a 
statement of research interests, and the names and full contact details of 
three referees should be sent to: narly.golest...@unige.ch.

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[Freesurfer] freesurfer atlases/versions

2012-12-28 Thread Narly Golestani


Dear all,

I have a quick question re- the different atlases used by the different 
versions of freesurfer. I'd like to know if there will be any differences in 
the auditory cortex labelization process if we use freesurfer version 4.5 and 
upwards. From the below post I have the impression that version 4.5 and upwards 
(until 5.2?) all apply similar rules for parcellating the 3 auditory cortex 
ROIs that we're interested in (the transverse temporal gyrus and sulcus, and 
the planum temporale).
http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg20932.html

Thanks in advance for your input,
with best wishes,
Narly Golestani.

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[Freesurfer] Post-Doctoral position in brain imaging and computational morphometry – University of Geneva

2012-12-14 Thread Narly Golestani

Post-Doctoral applications are invited in the newly established Brain and 
Language Lab at the Department of Clinical Neuroscience at the University of 
Geneva, in collaboration with the Swiss Institute of Technology (EPFL) in 
Lausanne, Switzerland.  Projects will include the development of new 
data-driven computational morphometry methods for analysis of structural 
magnetic resonance imaging (MRI) data, and application of these to large 
datasets in the context of normal variability, disease, and expertise. 

Candidates should have a degree in Biomedical Engineering, Computational 
Neuroscience, or a related field with a strong mathematical and computational 
background. Ideally they should have experience in brain image analysis, 
pattern recognition, machine learning, statistics as well as excellent 
programming skills. 

We offer a competitive starting salary of 68, 964 CHF/year, or more depending 
on experience.

The position is available immediately, and applications will be considered 
until the position is filled.  Informal inquiries can be addressed to Narly 
Golestani (narly.golest...@unige.ch).   Applications including a CV, a 
statement of research interests, and the names and full contact details of 
three referees should be sent to: narly.golest...@unige.ch.

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[Freesurfer] Which atlas to use for optimal parcellation of the auditory cortex (HG and of the PT )?

2012-10-11 Thread Narly Golestani


Dear all, dear Christophe Destrieux, 

1. I would like to know which is the best version of freesurfer to use, or 
rather
regarding the best atlas to call (using a flag) in order to ensure that our
parcellation of the auditory cortex, and of the first transverse temporal gyrus
and of the planum temporale in particular, are optimal. I see in an email dated
Jan 3rd of this year that it was suggested to use the 2009 atlas for
this. Is this still the best option to use? 

 

2. and..: Can I invoke this by using the ‘--annot aparc.a2009s’ flag when 
writing the results to a table
after having run recon-all –all using freesurfer version 4.4?  If I’m not 
mistaken, version 4.4 does not
generate the 2009 atlas, and I will need to instead run a more recent version 
of freesurfer. 

Thanks in advance for any input that you may have, 
Best wishes,
Narly.


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[Freesurfer] PhD position available – Cognitive Neuroimaging of Language and Audition

2012-10-10 Thread Narly GOLESTANI

Dear all, 

Applications are invited for a PhD in the newly established ‘Brain and Language 
Lab’ at the University of Geneva in Switzerland, under the supervision of Narly 
Golestani. Projects will include using functional MRI (fMRI), structural MRI 
(sMRI), diffusion tensor imaging (DTI) and electroencephalography (EEG) to 
better understand brain functional and structural plasticity arising from 
auditory training.

The laboratory is affiliated with the Department of Clinical Neuroscience of 
the Faculty of Medicine at the University of Geneva, and is a member of the 
Geneva University Neuroscience Center (http://neurocenter.unige.ch/). 

Geneva offers a thriving international environment, with extensive cultural and 
outdoor activities, and a high quality of living.

Applicants should have strong interest and a background in neuroscience and 
ideally also in language and/or auditory research. Prior experience with fMRI, 
sMRI, DTI and/or EEG is required.

Salary will start at 45,540 CHF per year and will increase by about 2,200 CHF 
annually. 

Applications will be considered until the position is filled. Informal 
inquiries can be addressed to Narly Golestani (narly.golest...@unige.ch). 
Applications including a CV including list of publications, a statement of 
research interests, and the names and full contact details of two referees 
should be sent to: narly.golest...@unige.ch.

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[Freesurfer] Post-Doctoral position in Computational Morphometry – University of Geneva

2012-07-04 Thread Narly GOLESTANI

Post-Doctoral applications are invited at the Department of Clinical 
Neuroscience at the University of Geneva, in collaboration with the Swiss 
Institute of Technology (EPFL) in Lausanne, Switzerland.  Projects will include 
the development of new data-driven computational morphometry methods for 
analysis of structural magnetic resonance imaging (MRI) data, and application 
of these to large datasets in the context of normal variability, disease, and 
expertise. 

Candidates should have a degree in Biomedical Engineering, Computational 
Neuroscience, or a related field with a strong mathematical and computational 
background. Ideally they should have experience in brain image analysis, 
pattern recognition, machine learning, statistics as well as excellent 
programming skills. 

We offer a starting salary of 68, 964 CHF/year.

The position is available immediately, and applications will be considered 
until the position is filled.  Informal inquiries can be addressed to Narly 
Golestani (narly.golest...@unige.ch). Applications including a CV, a statement 
of research interests, and the names and full contact details of three referees 
should be sent to: narly.golest...@unige.ch.

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[Freesurfer] Post-Doctoral position in brain imaging and computational morphometry – University of Geneva

2012-05-13 Thread Narly GOLESTANI

Post-Doctoral applications are invited at the Department of Clinical 
Neuroscience at the University of Geneva, in collaboration with the Swiss 
Institute of Technology (EPFL) in Lausanne, Switzerland. Projects will include 
the development of new data-driven computational morphometry methods for 
analysis of structural magnetic resonance imaging (MRI) data, and application 
of these to large datasets in the context of normal variability, disease, and 
expertise.

Candidates should have a degree in Biomedical Engineering, Computational 
Neuroscience, or a related field with a strong mathematical and computational 
background, and ideally experience in pattern recognition and brain image 
analysis as well as excellent programming skills.

We offer a competitive starting salary of 68, 964 CHF/year.

The position is available immediately, and applications will be considered 
until the position is filled. Informal inquiries can be addressed to Narly 
Golestani (narly.golest...@unige.ch). Applications including a CV, a statement 
of research interests, and the names and full contact details of three referees 
should be sent to: narly.golest...@unige.ch.
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[Freesurfer] PhD / Post-Doctoral position – Neuroimaging of language and audition, University of Geneva

2012-03-06 Thread Narly GOLESTANI






PhD / Post-Doctoral position – Neuroimaging of language and
audition, University of Geneva



 



-



Applications are invited at the PhD or at the Post-Doctoral level at the 
Department
of Clinical Neuroscience at the University
of Geneva in Switzerland,
under the supervision of Professor Narly Golestani.  Projects will include
developing new methods to analyze aspects of brain morphology using structural 
MRI,
and applying these in the context of normal variability, disease, and
expertise. 



 



Candidates should have a degree in Biomedical Engineering,
Computational Neuroscience, or a related field, and experience with analysis of
structural MRI data and with programming are highly desirable. Applicants
should have a strong interest in neuroscience and ideally also in research on
language and audition.   





The position can start as early as April 1st 2012, and applications
will be considered until the position is filled.  Informal inquiries can
be addressed to Narly Golestani 
(narly.golest...@unige.ch(https://webmail.unige.ch/horde/imp/message.php?index=6)). 
 Applications including a CV, a statement of research interests, and the
names and full contact details of two referees should be sent to: 
narly.golest...@unige.ch(https://webmail.unige.ch/horde/imp/message.php?index=6).


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