[Freesurfer] thalamic nuclei segmentation
External Email - Use Caution Hi Freesurfer experts, I processed ~150 subjects with freesurfer v6 (recon-all) and I was wondering if it is possible to use the script for the segmentation of the thalamic nuclei on these subjects. I know this part of the processing is now integrated in the v7 of freesurfer, but I'm thinking if there is a way to avoid re-run all the reconstruction with the new version. I looked in the wiki page, and it seems that there was a way to integrate the scripts in the fs-v6, but I don't find any downloadable package or scripts. Thanks for your help, Sara -- Sara Ponticorvo, PhD Department of Medicine Surgery and Dentistry University of Salerno ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Fwd: Re: Segmentation with FreeSurfer 7.1
External Email - Use Caution Subject: Re: Re: [Freesurfer] Segmentation with FreeSurfer 7.1 Message-ID Hi, thanks a lot. What do you mean for topological default? We have checked our data, and there aren't any visible artifacts (if you were referring to this kind of things). Actually we have seen these problems in about 50% of the already acquired data. If it can be useful for you we can also send you the raw DICOM images to check yourself. It is possible that there are some default settings in the 7.1 recon-all pipeline that we can adjust? Thanks again, Sara -- Sara Ponticorvo PhD Student Departement of Medicine Surgery and Dentistry, University of Salerno ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Thalamus segmentation
External Email - Use Caution Hi Freesurfer expert, I have a question regarding the segmentation of the thalamus. After the “standard” segmentation from the recon-all (aseg), in label thalamus-Proper is included the medial geniculate body? Thanks, Sara ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
