[Freesurfer] Error when using preproc-sess -per-session in FS-5.3
Hello, I am using freesurfer 5.3 and try to run: preproc-sess -s session1 -surface self lhrh -fsd bold -mni305 -fwhm 5 -per-session it gives me an error: 1/1 session1 1/1 session1 003 lh - Mon Aug 12 11:21:09 EDT 2013 ERROR: could not determine file for /export01/data/sepid/subjects/ZY/session1/bold/003/fmcpr however, it works fine when I use -per-run. I have attached complete terminal output. Thanks. typescript Description: typescript ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Error when using preproc-sess -per-session in FS-5.3
Just an update! FS 5.3 gives me the same error even when running -per-run. Using FS 5.1, the same error pops up only in -per-session and -per-run works fine. Thank you in advance. From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Sepide Movaghati [sepide.movagh...@mail.mcgill.ca] Sent: Monday, August 12, 2013 11:31 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Error when using preproc-sess -per-session in FS-5.3 Hello, I am using freesurfer 5.3 and try to run: preproc-sess -s session1 -surface self lhrh -fsd bold -mni305 -fwhm 5 -per-session it gives me an error: 1/1 session1 1/1 session1 003 lh - Mon Aug 12 11:21:09 EDT 2013 ERROR: could not determine file for /export01/data/sepid/subjects/ZY/session1/bold/003/fmcpr however, it works fine when I use -per-run. I have attached complete terminal output. Thanks. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] error when using selxavg3-sess in retinotopy analysis
Hi, I followed the steps for doing the retinotopy analysis. At the end I made my analysis as follows: mkanalysis-sess -a Retinotopy_ZY -surface self lh -TR 2 -retinotopy 36 -paradigm rtopy.par -fsd bold -fwhm 5 and then execute selxavg3-sess: selxavg3-sess –a Retinotopy_ZY –s session1 then I got this error which I do not how to solve it: outtop = /export01/data/sepid/subjects/ZY Extension format = nii.gz Error using fscanf Invalid file identifier. Use fopen to generate a valid file identifier. Error in flac_customize (line 47) flacnew.sourcesubject = fscanf(fp,'%s',1); Error in fast_selxavg3 (line 65) flac0 = flac_customize(flac0); -- ERROR: fast_selxavg3() failed\n I would appreciate if you help me through this. Regards, Sepide - I I - a ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
