Re: [Freesurfer] % overlap of multiple labels
Yes, that was actually what I meant. Thank you! Idil From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Tuesday, November 21, 2017 12:14 AM To: Freesurfer support list Subject: Re: [Freesurfer] % overlap of multiple labels I'm not sure I really understand your question. For the annotation case it reads the color table out of the annotation file (it is stored in the header), then gots through every annotation in the table in order and computes overlap On Mon, 20 Nov 2017, Yagmur Ozdemir 19 wrote: > Dr. Fischl, > > Thank you for the suggestion, I believe a --label-list option still does a > one-on-one comparison but I will think about it. > Another question: in the annotation file option, does the script look at the > names of labels in the annotation file to match labels across annotation > files for comparison or does it proceed from the list ordering? > > Best > Idil > > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl > [fis...@nmr.mgh.harvard.edu] > Sent: Saturday, November 18, 2017 5:43 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] % overlap of multiple labels > > Hi Idil > > I think you can use --label-list for multiple labels, or stuff them into > annot files and it should do everything it finds. > > cheers > Bruce > On Fri, 17 Nov 2017, > Yagmur Ozdemir 19 wrote: > >> Hello Freesurfer experts, >> >> I am using the mris_compute_parc_overlap command to compute the % overlap of >> two labels of the same >> region. Is there a way to do this for multiple labels? >> >> Best >> Idil >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] % overlap of multiple labels
I'm not sure I really understand your question. For the annotation case it reads the color table out of the annotation file (it is stored in the header), then gots through every annotation in the table in order and computes overlap On Mon, 20 Nov 2017, Yagmur Ozdemir 19 wrote: > Dr. Fischl, > > Thank you for the suggestion, I believe a --label-list option still does a > one-on-one comparison but I will think about it. > Another question: in the annotation file option, does the script look at the > names of labels in the annotation file to match labels across annotation > files for comparison or does it proceed from the list ordering? > > Best > Idil > > From: freesurfer-boun...@nmr.mgh.harvard.edu > [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl > [fis...@nmr.mgh.harvard.edu] > Sent: Saturday, November 18, 2017 5:43 PM > To: Freesurfer support list > Subject: Re: [Freesurfer] % overlap of multiple labels > > Hi Idil > > I think you can use --label-list for multiple labels, or stuff them into > annot files and it should do everything it finds. > > cheers > Bruce > On Fri, 17 Nov 2017, > Yagmur Ozdemir 19 wrote: > >> Hello Freesurfer experts, >> >> I am using the mris_compute_parc_overlap command to compute the % overlap of >> two labels of the same >> region. Is there a way to do this for multiple labels? >> >> Best >> Idil >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] % overlap of multiple labels
Dr. Fischl, Thank you for the suggestion, I believe a --label-list option still does a one-on-one comparison but I will think about it. Another question: in the annotation file option, does the script look at the names of labels in the annotation file to match labels across annotation files for comparison or does it proceed from the list ordering? Best Idil From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Saturday, November 18, 2017 5:43 PM To: Freesurfer support list Subject: Re: [Freesurfer] % overlap of multiple labels Hi Idil I think you can use --label-list for multiple labels, or stuff them into annot files and it should do everything it finds. cheers Bruce On Fri, 17 Nov 2017, Yagmur Ozdemir 19 wrote: > Hello Freesurfer experts, > > I am using the mris_compute_parc_overlap command to compute the % overlap of > two labels of the same > region. Is there a way to do this for multiple labels? > > Best > Idil > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] % overlap of multiple labels
Hi Idil I think you can use --label-list for multiple labels, or stuff them into annot files and it should do everything it finds. cheers Bruce On Fri, 17 Nov 2017, Yagmur Ozdemir 19 wrote: > Hello Freesurfer experts, > > I am using the mris_compute_parc_overlap command to compute the % overlap of > two labels of the same > region. Is there a way to do this for multiple labels? > > Best > Idil > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] % overlap of multiple labels
Hello Freesurfer experts, I am using the mris_compute_parc_overlap command to compute the % overlap of two labels of the same region. Is there a way to do this for multiple labels? Best Idil ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
