[Freesurfer] 2D representation of the cortex to get cortical thickness measure

2015-01-21 Thread Zia, Mohammad

Hi,

Is it possible to get over some 2D representation of the cortex (whether it's 
on a plane, on the surface of a sphere, it doesn't matter (although the plane 
would probably be easiest to work with))  to get cortical thickness measures  
at every location?

Thanks,
--Mohammad


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Re: [Freesurfer] 2D representation of the cortex to get cortical thickness measure

2015-01-21 Thread Bruce Fischl

Hi Mohammad,

the thickness can be displayed as a map on any surface we create. We do 
create ?h.sphere files by default, so you can use those if you want. If 
you'd rather a planar representation you need to make cuts in the inflated 
surface and use mris_flatten.


cheers
Bruce


 On Wed, 21 Jan 2015, Zia, Mohammad 
wrote:




Hi,

Is it possible to get over some 2D representation of the cortex (whether it's 
on a plane,
on the surface of a sphere, it doesn't matter (although the plane would 
probably be
easiest to work with))  to get cortical thickness measures  at every location? 

Thanks,
--Mohammad 


This e-mail message, including any attachments, is for the sole use of the 
intended
recipient(s) and may contain confidential and privileged information. Any 
unauthorized
review, use, disclosure or distribution is prohibited. If you are not the 
intended
recipient, please contact the sender by e-mail and destroy all copies of the 
original.
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