[Freesurfer] 2D smoothing kernel and cluster size

2013-08-16 Thread Subhabrata Chaudhury
Hi All,

When we say FWHM 10, does that mean a circle with a radius of 10 mm ? 
Also I have some significant clusters from my analysis, will the area of the 
cluster be in mm2 ? How is the area of a significant cluster calculated ? I 
mean the math behind it. Is it mapping the cluster to the 1mm3 volume and 
counting the number of voxels ? (I know I can make a label of the cluster and 
run the anatomical-stats command to get the value ? 

Thank you

Subha
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Re: [Freesurfer] 2D smoothing kernel and cluster size

2013-08-16 Thread Douglas Greve


On 8/16/13 11:01 AM, Subhabrata Chaudhury wrote:

Hi All,
When we say FWHM 10, does that mean a circle with a radius of 10 mm ?

Yes. It is actually a 2D isotropic gaussian, so isoclines are a circle.
Also I have some significant clusters from my analysis, will the area 
of the cluster be in mm2 ?

Yes.


How is the area of a significant cluster calculated ?

Summing up the area of the triangles of the vertices in the cluster.
doug

I mean the math behind it. Is it mapping the cluster to the 1mm3 
volume and counting the number of voxels ? (I know I can make a label 
of the cluster and run the anatomical-stats command to get the value ?

Thank you
Subha


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