[Freesurfer] BA46 volume from rostral mid-frontal gyrus

2016-01-09 Thread Jae Cho
Dear FreeSurfer Experts,

Could someone help me with a pipeline for creating a label from an edited
existing label? I have aligned the aparc+aseg and its respective orig into
ac-pc plane using AFNI. I then used fslmaths to make an ROI of just the
rh_mid-frontal-gyrus. After editing the ROI using freeview, I am having
trouble identifying which commands to use in order to create a new label
and extracting the volume.

Thank you,
Jae
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Re: [Freesurfer] BA46 volume from rostral mid-frontal gyrus

2016-01-11 Thread Douglas N Greve
Use mri_vol2label to create a label file. If you want the label on the 
surface, then use mri_label2label with the --paint option

On 01/09/2016 03:11 PM, Jae Cho wrote:
> Dear FreeSurfer Experts,
>
> Could someone help me with a pipeline for creating a label from an 
> edited existing label? I have aligned the aparc+aseg and its 
> respective orig into ac-pc plane using AFNI. I then used fslmaths to 
> make an ROI of just the rh_mid-frontal-gyrus. After editing the ROI 
> using freeview, I am having trouble identifying which commands to use 
> in order to create a new label and extracting the volume.
>
> Thank you,
> Jae
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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