External Email - Use Caution Dear FS developers,
I know how to use freeview to capture one static image and save it to a file. For example, I can capture coronal view's slice 100 using this command: freeview \ -v $SUBJECTS_DIR/$subjectid/mri/orig.mgz \ -f $SUBJECTS_DIR/$ subjectid /surf/lh.white:edgecolor='255,255,255' \ -f $SUBJECTS_DIR/$ subjectid /surf/lh.pial:edgecolor='0,0,255' \ -f $SUBJECTS_DIR/$ subjectid /surf/rh.white:edgecolor='255,255,255' \ -f $SUBJECTS_DIR/$ subjectid /surf/rh.pial:edgecolor='0,0,255' \ -viewsize 1024 1024 -viewport coronal --nocursor -zoom 1.5 \ -slice 127 127 *100 *-ss tmp/captued My first question is: how can I capture all 256 coronal slices using one freeview command? If I use a loop to run that above freeview command, it would be very very slow, because it needs to load the volume and all surfaces 256 times. Do you have a method that allows me to load the volume and surfaces only once and capture many images and save them? My 2nd question is: do you have a method to capture images in the background without needing to open the freeview GUI? Thanks John
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer