Re: [Freesurfer] Combining lh. and rh. surfaces

[Maheen Siddiqui]

Hi Jesu,

Thanks very much for your reply. I have downloaded SIMNIBS and will try to
use it to do this. Is there a tutorial you recommend to do this specific
thing that I have asked?

Thanks!

Maheen

On Fri, Feb 5, 2016 at 1:39 PM, Jesu Kiran Jk  wrote:

> Hi Maheen,
>
> I have been using SIMNIBS (www.simnibs.de) script for the exact same
> thing. This script gives a mesh output.
>
> Perhaps that helps,..
>
> Kind regards,
> Jesu
>
> Jesu Kiran Spurgen
> Postgraduate Student in Advanced Medical Imaging
> KU Leuven, Belgium
>
> On Fri, Feb 5, 2016 at 1:29 PM, Maheen Siddiqui <
> maheen.siddiqu...@gmail.com> wrote:
>
>>
>> Dear FreeSurfer Users,
>>
>>
>> I have been using the recon-all FreeSurfer command to reconstruct
>> surfaces from T1 weighted MRI scan. I need to import the surfaces I have
>> into Homer2 Atlas Viewer and for this I need whole surface/volume files
>> rather than the individual hemispheres. Does anybody have experience
>> combining the hemispheres?
>>
>>
>> Many thanks,
>>
>>
>> Maheen
>>
>>
>> Maheen Siddiqui
>>
>>
>>
>> BBSRC LIDo PhD Student
>>
>> Centre for Brain and Cognitive Development
>>
>> Birkbeck, University of London
>>
>> London
>>
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>> The information in this e-mail is intended only for the person to whom it
>> is
>> addressed. If you believe this e-mail was sent to you in error and the
>> e-mail
>> contains patient information, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to you
>> in error
>> but does not contain patient information, please contact the sender and
>> properly
>> dispose of the e-mail.
>>
>>
>
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[Freesurfer] Combining lh. and rh. surfaces

[Maheen Siddiqui]

Dear FreeSurfer Users,


I have been using the recon-all FreeSurfer command to reconstruct surfaces
from T1 weighted MRI scan. I need to import the surfaces I have into Homer2
Atlas Viewer and for this I need whole surface/volume files rather than the
individual hemispheres. Does anybody have experience combining the
hemispheres?


Many thanks,


Maheen


Maheen Siddiqui



BBSRC LIDo PhD Student

Centre for Brain and Cognitive Development

Birkbeck, University of London

London
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addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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Re: [Freesurfer] Combining lh. and rh. surfaces

[Jesu Kiran Jk]

Hi Maheen,

I have been using SIMNIBS (www.simnibs.de) script for the exact same thing.
This script gives a mesh output.

Perhaps that helps,..

Kind regards,
Jesu

Jesu Kiran Spurgen
Postgraduate Student in Advanced Medical Imaging
KU Leuven, Belgium

On Fri, Feb 5, 2016 at 1:29 PM, Maheen Siddiqui  wrote:

>
> Dear FreeSurfer Users,
>
>
> I have been using the recon-all FreeSurfer command to reconstruct surfaces
> from T1 weighted MRI scan. I need to import the surfaces I have into Homer2
> Atlas Viewer and for this I need whole surface/volume files rather than the
> individual hemispheres. Does anybody have experience combining the
> hemispheres?
>
>
> Many thanks,
>
>
> Maheen
>
>
> Maheen Siddiqui
>
>
>
> BBSRC LIDo PhD Student
>
> Centre for Brain and Cognitive Development
>
> Birkbeck, University of London
>
> London
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.