[Freesurfer] Correspondence between label vertex number and time course
Dear experts I have created a larger number of labels on the FS_average surface and performed an FS_FAST analysis. The main goal is to obtain a functional connectome that contains all the possible correlations between 50 Rois in 100 subjects. The FS_fast analysis resulted in a fmcpr.sm5.subject.lh.nii.gz file. I assume that this file has been mapped to the FS_average surface using spherical alignment. Therefore the vertex numbers reported in the FS_average label may directly correspond with the column position of the time course in the two dimensional lh.nii.gz for any given subject. Is this correct? Or do I need to transform the lh.nii.gz with a spherical coreg file? Thanks in advance Cheers Jan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Correspondence between label vertex number and time course
You are correct. Note that if you want to compute an average inside of a label, that you may want to use fMRI data that is unsmoothed (even on the surface) as this will cause false correlations between labels. doug On 01/21/2015 01:16 PM, Jan Willem Koten wrote: Dear experts I have created a larger number of labels on the FS_average surface and performed an FS_FAST analysis. The main goal is to obtain a functional connectome that contains all the possible correlations between 50 Rois in 100 subjects. The FS_fast analysis resulted in a 'fmcpr.sm5.subject.lh.nii.gz' file. I assume that this file has been mapped to the FS_average surface using spherical alignment. Therefore the vertex numbers reported in the FS_average label may directly correspond with the column position of the time course in the two dimensional lh.nii.gz for any given subject*.* *Is this correct?* *Or do I need to transform the lh.nii.gz with a spherical coreg file? * Thanks in advance Cheers Jan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Correspondence between label vertex number and time course
thank you smoothing=shit; cheers jan Gesendet:Mittwoch, 21. Januar 2015 um 20:01 Uhr Von:Douglas N Greve gr...@nmr.mgh.harvard.edu An:freesurfer@nmr.mgh.harvard.edu Betreff:Re: [Freesurfer] Correspondence between label vertex number and time course You are correct. Note that if you want to compute an average inside of a label, that you may want to use fMRI data that is unsmoothed (even on the surface) as this will cause false correlations between labels. doug On 01/21/2015 01:16 PM, Jan Willem Koten wrote: Dear experts I have created a larger number of labels on the FS_average surface and performed an FS_FAST analysis. The main goal is to obtain a functional connectome that contains all the possible correlations between 50 Rois in 100 subjects. The FS_fast analysis resulted in a fmcpr.sm5.subject.lh.nii.gz file. I assume that this file has been mapped to the FS_average surface using spherical alignment. Therefore the vertex numbers reported in the FS_average label may directly correspond with the column position of the time course in the two dimensional lh.nii.gz for any given subject*.* *Is this correct?* *Or do I need to transform the lh.nii.gz with a spherical coreg file? * Thanks in advance Cheers Jan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
