Re: [Freesurfer] ERROR running mkcontrast - in FsFastTutorialV5.1

[Douglas N Greve]

Try giving it a -c 0
doug

Carl Anderson wrote:
> Dear Free Surfer,
>
> I have gotten to 3. Configure Contrasts 
> in 
> http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastTutorialV5.1/FsFastFirstLevel 
>
>
> When I run  *mkcontrast-sess -analysis my-workmem.sm05.lh -contrast 
> encode-v-base -a 1*
> I get the following result and error:
>
> vermisii:fsfast-functional carlanderson$ mkcontrast-sess -analysis 
> my-workmem.sm05.lh -contrast encode-v-base -a 1
> INFO: Found 5 Non-Null Conditions
> INFO: Found 1 Delays
> Condition Weights: 1. 0 0 0 0
> mkcontrast -anadir my-workmem.sm05.lh -wcond 1. 0 
> 0 0 0 -sumconds -o my-workmem.sm05.lh/encode-v-base.mat -wdelay 1 
> -no-octave
>   $Id: mkcontrast,v 1.10 2010/07/16 16:20:10 greve Exp $
> cmtxfile  my-workmem.sm05.lh/encode-v-base.mat
> nconds5,  wcond  1. 0 0 0 0
> ndelays   1, wdelay 1
> ndelays   1, wpsa   
> sumconds  1
> sumdelays 0
> nircorr   0
> TER   0.05
> rdelta
> rtau  
> ERROR running mkcontrast
> mkcontrast -anadir my-workmem.sm05.lh -wcond 1. 0 
> 0 0 0 -sumconds -o my-workmem.sm05.lh/encode-v-base.mat -wdelay 1 
> -no-octave
> Tue Sep 27 10:58:43 EDT 2011
>
> Any suggestions?
>
> Thanks!
>
> <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>
> Carl M. Anderson, Ph.D. (mail stop 204)
> Assistant Professor of Psychiatry,
> Harvard Medical School &
> The Neuroimaging Center,
> McLean Hospital 115 Mill St.  Belmont, MA 02478
> Ph: 617-855-2972;  Fax: 617-855-2770
> e-mail: remfr...@gmail.com ; 
> carl_ander...@hms.harvard.edu 
> <<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>
>
> 
>
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-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358 
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html

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[Freesurfer] ERROR running mkcontrast - in FsFastTutorialV5.1

[Carl Anderson]

Dear Free Surfer,

I have gotten to 3. Configure Contrasts in
http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastTutorialV5.1/FsFastFirstLevel

When I run  *mkcontrast-sess -analysis my-workmem.sm05.lh -contrast
encode-v-base -a 1*
I get the following result and error:

vermisii:fsfast-functional carlanderson$ mkcontrast-sess -analysis
my-workmem.sm05.lh -contrast encode-v-base -a 1
INFO: Found 5 Non-Null Conditions
INFO: Found 1 Delays
Condition Weights: 1. 0 0 0 0
mkcontrast -anadir my-workmem.sm05.lh -wcond 1. 0 0 0 0
-sumconds -o my-workmem.sm05.lh/encode-v-base.mat -wdelay 1 -no-octave
  $Id: mkcontrast,v 1.10 2010/07/16 16:20:10 greve Exp $
cmtxfile  my-workmem.sm05.lh/encode-v-base.mat
nconds5,  wcond  1. 0 0 0 0
ndelays   1, wdelay 1
ndelays   1, wpsa
sumconds  1
sumdelays 0
nircorr   0
TER   0.05
rdelta
rtau
ERROR running mkcontrast
mkcontrast -anadir my-workmem.sm05.lh -wcond 1. 0 0 0 0
-sumconds -o my-workmem.sm05.lh/encode-v-base.mat -wdelay 1 -no-octave
Tue Sep 27 10:58:43 EDT 2011

Any suggestions?

Thanks!

<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>
Carl M. Anderson, Ph.D. (mail stop 204)
Assistant Professor of Psychiatry,
Harvard Medical School &
The Neuroimaging Center,
McLean Hospital 115 Mill St.  Belmont, MA 02478
Ph: 617-855-2972;  Fax: 617-855-2770
e-mail: remfr...@gmail.com; carl_ander...@hms.harvard.edu
<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>~<>~<<•>>
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.