Re: [Freesurfer] Error tkmedit

2018-11-19 Thread Bruce Fischl

Hi Rosalia

tkmedit is deprecated - can you try freeview? Also, check to make sure 
that your SUBJECTS_DIR is set properly (it looks like it is 
/home/ms_naroa/subjects and it probably should be 
~/Escritorio/subjects_controls)


cheers
Bruce


On Mon, 19 Nov 2018, Rosalia Dacosta Aguayo wrote:



External Email - Use Caution

Dear Free Surfer experts,

I am trying to load my brainmask and the T1 to make editions but I have a 
problem I do not know how
to solve.
I would much appreciate your helping here.
Best regards,
Rosalia

Problem:
ms_naroa@neuroimagen1:~/Escritorio/subjects_controls$ ls
001  006  013  021  027  031  035  039  047  fsaverage
002  008  014  023  028  032  036  040  betn_controls    NN
004  009  015  024  029  033  037  043  correct_errors
005  010  017  026  030  034  038  046  Errors_list.ods
ms_naroa@neuroimagen1:~/Escritorio/subjects_controls$ tkmedit 002 brainmask.mgz 
-aux T1.mgz
ERROR: cannot find subject 002 in /home/ms_naroa/subjects or it is not readable 
by you

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[Freesurfer] Error tkmedit

2018-11-19 Thread Rosalia Dacosta Aguayo
External Email - Use Caution

Dear Free Surfer experts,

I am trying to load my brainmask and the T1 to make editions but I have a
problem I do not know how to solve.
I would much appreciate your helping here.
Best regards,
Rosalia

*Problem: *
ms_naroa@neuroimagen1:~/Escritorio/subjects_controls$ ls
001  006  013  021  027  031  035  039  047  fsaverage
002  008  014  023  028  032  036  040  betn_controlsNN
004  009  015  024  029  033  037  043  correct_errors
005  010  017  026  030  034  038  046  Errors_list.ods
ms_naroa@neuroimagen1:~/Escritorio/subjects_controls$ tkmedit 002
brainmask.mgz -aux T1.mgz
*ERROR: cannot find subject 002 in /home/ms_naroa/subjects or it is not
readable by you*
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