Re: [Freesurfer] Export stats: HCP Multi Modal parcellation
External Email - Use Caution It might be necessary to resample the atlas to the native mesh surfaces and convert it to the .annot file format from GIFTI. The former can be done using these instructions to get to fsaverage and then presumably FreeSurfer has a tool to get it to the native mesh and the latter with mris_convert: https://secure-web.cisco.com/14YUuLKxR8nqmyOxrwK7DZrs4RQGGbNtr7w49dQj1Ij4Zka4d4kqMQf275lQEk6s5VCtrGZPFMLxTlGUIqPf4V-tscwWLIQzYWUvmfU3jwE7Xv0thgSwKkkmAfDxfjkDsw6P0Hr1NZNA98__f-Fq5ofMbHzIllAPPFaqe2oNp8paK-232vTFTzsCdsZhFbHVvg4X_hHh_jzQEPzoJNzF9NmKPDTCcuER-vIOeOieDje8g6UVl4R8Rl-5lSe63qeZ9ZZKTII7lwJP9kq4e_3tYeg/https%3A%2F%2Fwiki.humanconnectome.org%2Fdownload%2Fattachments%2F63078513%2FResampling-FreeSurfer-HCP.pdf Matt. From: on behalf of Miguel Ángel Rivas Fernández Reply-To: Freesurfer support list Date: Wednesday, March 31, 2021 at 8:58 AM To: Freesurfer support list Subject: Re: [Freesurfer] Export stats: HCP Multi Modal parcellation External Email - Use Caution Hello Glasser, In addition to freesurfer's asegstats2table, I would be interested in volume, cortical thickness and area of the HCP atlas (please, see attached .csv file). Other software (e.g CAT12<http://secure-web.cisco.com/1COAdbRtDckHN6yiHBswwxyVsNqxiQs4J0BIS3hCQNJzehplVAuaKl0ugaaaCSeAfNzGdiJpsvU6rvCBU9qIhWpNEmuB5E_ojQBwSRyr9qaSyv5oU0ed91aiW7flrQXvoPLoIyDuKczkUZI6P9NtmVQQqy01bFfwg_qZ8BES-sVkfG4hnppkEYdZb_dXubwS-Xt-QLigkXU9P3ZcpEIZB1hUvLLXtw-RM99oapY7Dm8XYjdgD9PM7R654BuszY4iuqGBnbLgZEA4VGHPlQJsk9A/http%3A%2F%2Fwww.neuro.uni-jena.de%2Fcat12-html%2Fcat_methods_RBM.html%23FS_HCP>) allows exporting these measurements in HCP parcellation but I would like to know if it is possible with MRI data processed un FS.v6 Thank you in advance. Best regards, # El mié., 31 mar. 2021 15:28, Glasser, Matthew mailto:glass...@wustl.edu>> escribió: External Email - Use Caution What stats are you looking for? Matt. From: mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Miguel Ángel Rivas Fernández mailto:miguelrivasf...@gmail.com>> Reply-To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Date: Wednesday, March 31, 2021 at 4:36 AM To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: [Freesurfer] Export stats: HCP Multi Modal parcellation External Email - Use Caution Dear Freesurfer experts, it is possible to export the stats of subjects reconstructed with freesurfer v.6 using the HCP Multi Modal parcellation? (Glasser et al., 2016). Thank you in advance. Best regards, -- Miguel Ángel Rivas Fernández The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://secure-web.cisco.com/1D3RUPNr22Aomw-x2Nwhwkir2Jl3SGeTIK6hkmCI518aAyqv07Q5K_OaRNSjuEe2XR09KgCzEdqsdGx671Y8hLJDu0G-QhSiX0Rhbop6EZVw6JkOzWJAy2JwLCZO5fe21oNs-LLZ7VYFRF9y3wvbzdSBixNjKu2dBbIcrJmWu_kC_pNKpFAHpWHaqrzVdxSGUl4u5iU8_MNWi01pPRnE19ZVOTbcbf-QdrKL4qLTsd80vHiVKPoaR4G4tdLR8ANgb4NWs1p1EKrpFHRMZ-3SDMg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer<https://secure-web.cisco.com/1zrZ5NgwlmYyTyG0sGwBn4QgIqRsDKmXsWOeLE3T6NKGEKHoICs0g131f8SZqVQ9ipaWG2fl0iCv8_kq0zGE1aLTDbKq872D46BHHxMF91NDp6UksZOMoNeV1aAkCwsrjyKTDlnlqE2GeYcUDQDJFMf0qBKOkBGanibW1T4xs3c8yBL1Sj2W7ZCKUI5PQd-vUsf1mIQll5eyexTepf0DAnjkzMfhVdtRDNpW38Z8cpCNpspWzfNDFy6EA-GSXnwl3oBg_9YlXcN3Mw9iUJpZmKA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Export stats: HCP Multi Modal parcellation
External Email - Use Caution Hello Glasser, In addition to freesurfer's asegstats2table, I would be interested in volume, cortical thickness and area of the HCP atlas (please, see attached .csv file). Other software (e.g CAT12 <http://secure-web.cisco.com/1COAdbRtDckHN6yiHBswwxyVsNqxiQs4J0BIS3hCQNJzehplVAuaKl0ugaaaCSeAfNzGdiJpsvU6rvCBU9qIhWpNEmuB5E_ojQBwSRyr9qaSyv5oU0ed91aiW7flrQXvoPLoIyDuKczkUZI6P9NtmVQQqy01bFfwg_qZ8BES-sVkfG4hnppkEYdZb_dXubwS-Xt-QLigkXU9P3ZcpEIZB1hUvLLXtw-RM99oapY7Dm8XYjdgD9PM7R654BuszY4iuqGBnbLgZEA4VGHPlQJsk9A/http%3A%2F%2Fwww.neuro.uni-jena.de%2Fcat12-html%2Fcat_methods_RBM.html%23FS_HCP>) allows exporting these measurements in HCP parcellation but I would like to know if it is possible with MRI data processed un FS.v6 Thank you in advance. Best regards, # El mié., 31 mar. 2021 15:28, Glasser, Matthew escribió: > External Email - Use Caution > > What stats are you looking for? > > Matt. > > > > *From: * on behalf of Miguel > Ángel Rivas Fernández > *Reply-To: *Freesurfer support list > *Date: *Wednesday, March 31, 2021 at 4:36 AM > *To: *Freesurfer support list > *Subject: *[Freesurfer] Export stats: HCP Multi Modal parcellation > > > > *External Email - Use Caution* > > > > Dear Freesurfer experts, > > > > it is possible to export the stats of subjects reconstructed with > freesurfer v.6 using the HCP Multi Modal parcellation? (Glasser et al., > 2016). > > > > Thank you in advance. > > > > Best regards, > > > -- > > *Miguel Ángel Rivas Fernández* > > > > > -- > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1zrZ5NgwlmYyTyG0sGwBn4QgIqRsDKmXsWOeLE3T6NKGEKHoICs0g131f8SZqVQ9ipaWG2fl0iCv8_kq0zGE1aLTDbKq872D46BHHxMF91NDp6UksZOMoNeV1aAkCwsrjyKTDlnlqE2GeYcUDQDJFMf0qBKOkBGanibW1T4xs3c8yBL1Sj2W7ZCKUI5PQd-vUsf1mIQll5eyexTepf0DAnjkzMfhVdtRDNpW38Z8cpCNpspWzfNDFy6EA-GSXnwl3oBg_9YlXcN3Mw9iUJpZmKA/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer lh_L_V1_ROI_thickness lh_L_MST_ROI_thickness lh_L_V6_ROI_thickness lh_L_V2_ROI_thickness lh_L_V3_ROI_thickness lh_L_V4_ROI_thickness lh_L_V8_ROI_thickness lh_L_4_ROI_thickness lh_L_3b_ROI_thickness lh_L_FEF_ROI_thickness lh_L_PEF_ROI_thickness lh_L_55b_ROI_thickness lh_L_V3A_ROI_thickness lh_L_RSC_ROI_thickness lh_L_POS2_ROI_thickness lh_L_V7_ROI_thickness lh_L_IPS1_ROI_thickness lh_L_FFC_ROI_thickness lh_L_V3B_ROI_thickness lh_L_LO1_ROI_thickness lh_L_LO2_ROI_thickness lh_L_PIT_ROI_thickness lh_L_MT_ROI_thickness lh_L_A1_ROI_thickness lh_L_PSL_ROI_thickness lh_L_SFL_ROI_thickness lh_L_PCV_ROI_thickness lh_L_STV_ROI_thickness lh_L_7Pm_ROI_thickness lh_L_7m_ROI_thickness lh_L_POS1_ROI_thickness lh_L_23d_ROI_thickness lh_L_v23ab_ROI_thickness lh_L_d23ab_ROI_thickness lh_L_31pv_ROI_thickness lh_L_5m_ROI_thickness lh_L_5mv_ROI_thickness lh_L_23c_ROI_thickness lh_L_5L_ROI_thickness lh_L_24dd_ROI_thickness lh_L_24dv_ROI_thickness lh_L_7AL_ROI_thickness lh_L_SCEF_ROI_thickness lh_L_6ma_ROI_thickness lh_L_7Am_ROI_thickness lh_L_7PL_ROI_thickness lh_L_7PC_ROI_thickness lh_L_LIPv_ROI_thickness lh_L_VIP_ROI_thickness lh_L_MIP_ROI_thickness lh_L_1_ROI_thickness lh_L_2_ROI_thickness lh_L_3a_ROI_thickness lh_L_6d_ROI_thickness lh_L_6mp_ROI_thickness lh_L_6v_ROI_thickness lh_L_p24pr_ROI_thickness lh_L_33pr_ROI_thickness lh_L_a24pr_ROI_thickness lh_L_p32pr_ROI_thickness lh_L_a24_ROI_thickness lh_L_d32_ROI_thickness lh_L_8BM_ROI_thickness lh_L_p32_ROI_thickness lh_L_10r_ROI_thickness lh_L_47m_ROI_thickness lh_L_8Av_ROI_thickness lh_L_8Ad_ROI_thickness lh_L_9m_ROI_thickness lh_L_8BL_ROI_thickness lh_L_9p_ROI_thickness lh_L_10d_ROI_thickness lh_L_8C_ROI_thickness lh_L_44_ROI_thickness lh_L_45_ROI_thickness lh_L_47l_ROI_thickness lh_L_a47r_ROI_thickness lh_L_6r_ROI_thickness lh_L_IFJa_ROI_thickness lh_L_IFJp_ROI_thickness lh_L_IFSp_ROI_thickness lh_L_IFSa_ROI_thickness lh_L_p9.46v_ROI_thickness lh_L_46_ROI_thickness lh_L_a9.46v_ROI_thickness lh_L_9.46d_ROI_thickness lh_L_9a_ROI_thickness lh_L_10v_ROI_thickness lh_L_a10p_ROI_thickness lh_L_10pp_ROI_thickness lh_L_11l_ROI_thickness lh_L_13l_ROI_thickness lh_L_OFC_ROI_thickness lh_L_47s_ROI_thickness lh_L_LIPd_ROI_thickness lh_L_6a_ROI_thickness lh_L_i6.8_ROI_thickness lh_L_s6.8_ROI_thickness lh
Re: [Freesurfer] Export stats: HCP Multi Modal parcellation
External Email - Use Caution What stats are you looking for? Matt. From: on behalf of Miguel Ángel Rivas Fernández Reply-To: Freesurfer support list Date: Wednesday, March 31, 2021 at 4:36 AM To: Freesurfer support list Subject: [Freesurfer] Export stats: HCP Multi Modal parcellation External Email - Use Caution Dear Freesurfer experts, it is possible to export the stats of subjects reconstructed with freesurfer v.6 using the HCP Multi Modal parcellation? (Glasser et al., 2016). Thank you in advance. Best regards, -- Miguel Ángel Rivas Fernández The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Export stats: HCP Multi Modal parcellation
External Email - Use Caution Dear Freesurfer experts, it is possible to export the stats of subjects reconstructed with freesurfer v.6 using the HCP Multi Modal parcellation? (Glasser et al., 2016). Thank you in advance. Best regards, -- *Miguel Ángel Rivas Fernández* ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
