Re: [Freesurfer] Fwd: freeview error
Dear Ruopeng, Thanks for your help, Ruopeng.I learned the groupanalysis by manu of http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis. I ran this command on your tutorial data (buckner data). Would you please tell me where my hardware setup is inappropriate? Thanks. All the best. 2014-01-01 Rujing Zha 发件人：Ruopeng Wang 发送时间：2014-01-01 00:16 主题：Re: [Freesurfer] Fwd: freeview error 收件人："rujing cha" 抄送："charujing123","freesurfer" Hi Rujing, Your hardware setup does sound a bit insufficient to run freeview smoothly. But I don't think that is the reason "configure overlay" hangs. Would it be possible to send us the files used in your command? Best, Ruopeng On Dec 31, 2013, at 1:04 AM, rujing cha wrote: > Hi Bruce and others, > Thanks Bruce. I had installed the centos6.5 x86_64 in my computer, and > setup the freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz, > and I setup the nvidia drivers completely. Then I tried to run this > command: > freeview -f > $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.cluster.mgh:overlay_threshold=2,5:annot=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.ocn.annot > > . It did present the underlay(lh.inflated),overlay and annot, but it > suspended when I click the button "configure overlay". Then freeview > were suspended. The CPU ran "100%",and memory ran "23%". There was > nothing to do but terminated it manually in the command console by > "ctrl + c". > I want to know why I cannot configure overlay. Is it a poor graphic > card or CPU or memory? My graphic card is "NVIDIA GeForce 8600 GT", > and CPU is "Intel(R) Core(TM)2 Quad CPU Q6600 @ 2.40GHz 2.40GHz", and > RAM is 2.00G. > Thanks Bruce and others. > All the best. > 2013-12-30 > > > > Rujing Zha > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Fwd: freeview error
Hi Rujing, Your hardware setup does sound a bit insufficient to run freeview smoothly. But I don't think that is the reason "configure overlay" hangs. Would it be possible to send us the files used in your command? Best, Ruopeng On Dec 31, 2013, at 1:04 AM, rujing cha wrote: > Hi Bruce and others, > Thanks Bruce. I had installed the centos6.5 x86_64 in my computer, and > setup the freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz, > and I setup the nvidia drivers completely. Then I tried to run this > command: > freeview -f > $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.cluster.mgh:overlay_threshold=2,5:annot=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.ocn.annot > . It did present the underlay(lh.inflated),overlay and annot, but it > suspended when I click the button "configure overlay". Then freeview > were suspended. The CPU ran "100%",and memory ran "23%". There was > nothing to do but terminated it manually in the command console by > "ctrl + c". > I want to know why I cannot configure overlay. Is it a poor graphic > card or CPU or memory? My graphic card is "NVIDIA GeForce 8600 GT", > and CPU is "Intel(R) Core(TM)2 Quad CPU Q6600 @ 2.40GHz 2.40GHz", and > RAM is 2.00G. > Thanks Bruce and others. > All the best. > 2013-12-30 > > > > Rujing Zha > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] Fwd: freeview error
Hi Bruce and others, Thanks Bruce. I had installed the centos6.5 x86_64 in my computer, and setup the freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz, and I setup the nvidia drivers completely. Then I tried to run this command: freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.cluster.mgh:overlay_threshold=2,5:annot=lh.gender_age.glmdir/lh-Avg-thickness-age-Cor/mc-z.negative.sig.ocn.annot . It did present the underlay(lh.inflated),overlay and annot, but it suspended when I click the button "configure overlay". Then freeview were suspended. The CPU ran "100%",and memory ran "23%". There was nothing to do but terminated it manually in the command console by "ctrl + c". I want to know why I cannot configure overlay. Is it a poor graphic card or CPU or memory? My graphic card is "NVIDIA GeForce 8600 GT", and CPU is "Intel(R) Core(TM)2 Quad CPU Q6600 @ 2.40GHz 2.40GHz", and RAM is 2.00G. Thanks Bruce and others. All the best. 2013-12-30 Rujing Zha ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
