When you say "gray matter volume", does it mean you are trying to do a VBM-style analysis? You can't do VBM with FS. You can do an analysis of cortical GM volume in a similar way. When you run mris_preproc, specify "volume" as the --meas
On 12/12/19 12:58 PM, Marisa Cathryn Ross wrote: > > External Email - Use Caution > > Hello, > > Thanks in advance for your patience with what is probably a very basic > question! > > We would like to run a group analysis with gray matter volume at the > voxel level following manual edits, and we are unsure which .mgz file > is the proper output to use as the final output from manual edits. We > do not have brain.finalsurfs.manedit.mgz files. Which subject file is > the recommended output to use for a whole-brain voxel level group > analysis after manual edits? I have included a screenshot of an > example subject’s /mri directory below. > > A screenshot of text Description automatically generated > > Thank you, > > Marisa Ross > > -- > > /Marisa C. Ross, MPA/ > > PhD Candidate > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
