Re: [Freesurfer] How to automate recon-all command for multiple subjects
External Email - Use Caution Thanks! On Tue, Nov 20, 2018 at 8:57 PM Bruce Fischl wrote: > > in csh it would be something like > > setenv SUBJECTS_DIR > foreach fname ($dir/*.nii) > set fonly=${f:t} > set fnoext=${f:r} > recon-all -i $fname -s $fnoext -all > end > > > On Tue, 20 Nov 2018, Vivek Sharma wrote: > > > > > External Email - Use Caution > > > > I have a folder, lets name xyz which contains .nii file. Now I want to > run recon-all for all the > > files in that folder. Please let me know how I can do that. > > > > On Tue, Nov 20, 2018 at 11:40 AM Vivek Sharma < > vivek.sharma1...@gmail.com> wrote: > > I'm trying to run this code but it's not working. What should be > $i in the code? > > On Mon, Nov 19, 2018 at 9:15 PM Bruce Fischl < > fis...@nmr.mgh.harvard.edu> wrote: > > or you could do that all on a single line: > > > > recon-all -i $SUBJECTS_DIR/$i/ -s $i -all > > > > cheers > > Bruce > > > > On Mon, 19 Nov 2018, > > Alex Hanganu > > wrote: > > > > > > > > External Email - Use Caution > > > > > > HI Vivek, > > > you probably need 2 steps, first registration, second recon-all. > Something > > > like: > > > > > > ... > > > do > > >recon-all -i $SUBJECTS_DIR/$i/ -s $i > > >recon-all -all -subjid $i > > > > > > > > > I didn't check if the scrips runs. That's the general structure. > > > > > > Best, > > > Alex > > > > > > Le lun. 19 nov. 2018, à 06 h 26, Vivek Sharma < > vivek.sharma1...@gmail.com> a > > > écrit : > > > > > > External Email - Use Caution > > > > > > Hi, > > > I'm using freesurfer to generate head surfaces using MRI file. > > > I want to execute recon-all command for number of subjects, but > unable > > > to run it. > > > The script I'm using is: > > > > > > for i in `cat *subs.txt*` > > > do > > > recon-all -s $i -all -qcache > > > done > > > > > > subs.txt contains the name of folder that contains .nii file. > > > The scripts ends with the following error: > > > > > > ERROR: no run data found in > > > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri. Make > sure to > > > have a volume called 001.mgz in > > > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri/orig. > > > If you have a second run of data call it 002.mgz, etc. > > > See also: > > > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion > > > Linux cblhost 4.4.0-83-generic #106~14.04.1-Ubuntu SMP Mon Jun 26 > > > 18:10:19 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux > > > > > > Please let me know how I can run recon-all for multiple subjects. > > > Thank you. > > > > > > -- > > > Vivek Sharma > > > Mobile: +919953582034 > > > Skype: vivek.sharma1015 > > > ___ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > >___ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > -- > > Vivek Sharma > > Mobile: +919953582034 > > Skype: vivek.sharma1015 > > > > > > > > -- > > Vivek Sharma > > Mobile: +919953582034 > > Skype: vivek.sharma1015 > > > >___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Vivek Sharma Mobile: +919953582034 Skype: vivek.sharma1015 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] How to automate recon-all command for multiple subjects
in csh it would be something like setenv SUBJECTS_DIR foreach fname ($dir/*.nii) set fonly=${f:t} set fnoext=${f:r} recon-all -i $fname -s $fnoext -all end On Tue, 20 Nov 2018, Vivek Sharma wrote: External Email - Use Caution I have a folder, lets name xyz which contains .nii file. Now I want to run recon-all for all the files in that folder. Please let me know how I can do that. On Tue, Nov 20, 2018 at 11:40 AM Vivek Sharma wrote: I'm trying to run this code but it's not working. What should be $i in the code? On Mon, Nov 19, 2018 at 9:15 PM Bruce Fischl wrote: or you could do that all on a single line: recon-all -i $SUBJECTS_DIR/$i/ -s $i -all cheers Bruce On Mon, 19 Nov 2018, Alex Hanganu wrote: > > External Email - Use Caution > > HI Vivek, > you probably need 2 steps, first registration, second recon-all. Something > like: > > ... > do > recon-all -i $SUBJECTS_DIR/$i/ -s $i > recon-all -all -subjid $i > > > I didn't check if the scrips runs. That's the general structure. > > Best, > Alex > > Le lun. 19 nov. 2018, à 06 h 26, Vivek Sharma a > écrit : > > External Email - Use Caution > > Hi, > I'm using freesurfer to generate head surfaces using MRI file. > I want to execute recon-all command for number of subjects, but unable > to run it. > The script I'm using is: > > for i in `cat *subs.txt*` > do > recon-all -s $i -all -qcache > done > > subs.txt contains the name of folder that contains .nii file. > The scripts ends with the following error: > > ERROR: no run data found in > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri. Make sure to > have a volume called 001.mgz in > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri/orig. > If you have a second run of data call it 002.mgz, etc. > See also: > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion > Linux cblhost 4.4.0-83-generic #106~14.04.1-Ubuntu SMP Mon Jun 26 > 18:10:19 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux > > Please let me know how I can run recon-all for multiple subjects. > Thank you. > > -- > Vivek Sharma > Mobile: +919953582034 > Skype: vivek.sharma1015 > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Vivek Sharma Mobile: +919953582034 Skype: vivek.sharma1015 -- Vivek Sharma Mobile: +919953582034 Skype: vivek.sharma1015 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] How to automate recon-all command for multiple subjects
oh, that was from your example. -i should be the full path to the input volume *or* one file in the correct dicom series. -s is something you choose to uniquely identify that subject's recon-all outputs cheers Bruce On Tue, 20 Nov 2018, Vivek Sharma wrote: External Email - Use Caution I'm trying to run this code but it's not working. What should be $i in the code? On Mon, Nov 19, 2018 at 9:15 PM Bruce Fischl wrote: or you could do that all on a single line: recon-all -i $SUBJECTS_DIR/$i/ -s $i -all cheers Bruce On Mon, 19 Nov 2018, Alex Hanganu wrote: > > External Email - Use Caution > > HI Vivek, > you probably need 2 steps, first registration, second recon-all. Something > like: > > ... > do > recon-all -i $SUBJECTS_DIR/$i/ -s $i > recon-all -all -subjid $i > > > I didn't check if the scrips runs. That's the general structure. > > Best, > Alex > > Le lun. 19 nov. 2018, à 06 h 26, Vivek Sharma a > écrit : > > External Email - Use Caution > > Hi, > I'm using freesurfer to generate head surfaces using MRI file. > I want to execute recon-all command for number of subjects, but unable > to run it. > The script I'm using is: > > for i in `cat *subs.txt*` > do > recon-all -s $i -all -qcache > done > > subs.txt contains the name of folder that contains .nii file. > The scripts ends with the following error: > > ERROR: no run data found in > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri. Make sure to > have a volume called 001.mgz in > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri/orig. > If you have a second run of data call it 002.mgz, etc. > See also: > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion > Linux cblhost 4.4.0-83-generic #106~14.04.1-Ubuntu SMP Mon Jun 26 > 18:10:19 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux > > Please let me know how I can run recon-all for multiple subjects. > Thank you. > > -- > Vivek Sharma > Mobile: +919953582034 > Skype: vivek.sharma1015 > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > >___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Vivek Sharma Mobile: +919953582034 Skype: vivek.sharma1015 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] How to automate recon-all command for multiple subjects
External Email - Use Caution Hi The following code worked. for asubject in /home/vivek/Downloads/freesurfer/subjects/*.nii; do recon-all -s ${asubject%.nii} -i $asubject -all -qcache; done Thank you. On Tue, Nov 20, 2018 at 12:19 PM Vivek Sharma wrote: > I have a folder, lets name xyz which contains .nii file. Now I want to run > recon-all for all the files in that folder. Please let me know how I can do > that. > > On Tue, Nov 20, 2018 at 11:40 AM Vivek Sharma > wrote: > >> I'm trying to run this code but it's not working. What should be $i in >> the code? >> On Mon, Nov 19, 2018 at 9:15 PM Bruce Fischl >> wrote: >> >>> or you could do that all on a single line: >>> >>> recon-all -i $SUBJECTS_DIR/$i/ -s $i -all >>> >>> cheers >>> Bruce >>> >>> On Mon, 19 Nov 2018, >>> Alex Hanganu >>> wrote: >>> >>> > >>> > External Email - Use Caution >>> > >>> > HI Vivek, >>> > you probably need 2 steps, first registration, second recon-all. >>> Something >>> > like: >>> > >>> > ... >>> > do >>> >recon-all -i $SUBJECTS_DIR/$i/ -s $i >>> >recon-all -all -subjid $i >>> > >>> > >>> > I didn't check if the scrips runs. That's the general structure. >>> > >>> > Best, >>> > Alex >>> > >>> > Le lun. 19 nov. 2018, à 06 h 26, Vivek Sharma < >>> vivek.sharma1...@gmail.com> a >>> > écrit : >>> > >>> > External Email - Use Caution >>> > >>> > Hi, >>> > I'm using freesurfer to generate head surfaces using MRI file. >>> > I want to execute recon-all command for number of subjects, but unable >>> > to run it. >>> > The script I'm using is: >>> > >>> > for i in `cat *subs.txt*` >>> > do >>> > recon-all -s $i -all -qcache >>> > done >>> > >>> > subs.txt contains the name of folder that contains .nii file. >>> > The scripts ends with the following error: >>> > >>> > ERROR: no run data found in >>> > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri. Make sure to >>> > have a volume called 001.mgz in >>> > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri/orig. >>> > If you have a second run of data call it 002.mgz, etc. >>> > See also: >>> > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion >>> > Linux cblhost 4.4.0-83-generic #106~14.04.1-Ubuntu SMP Mon Jun 26 >>> > 18:10:19 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux >>> > >>> > Please let me know how I can run recon-all for multiple subjects. >>> > Thank you. >>> > >>> > -- >>> > Vivek Sharma >>> > Mobile: +919953582034 >>> > Skype: vivek.sharma1015 >>> > ___ >>> > Freesurfer mailing list >>> > Freesurfer@nmr.mgh.harvard.edu >>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> > >>> > >>> >___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> -- >> Vivek Sharma >> Mobile: +919953582034 >> Skype: vivek.sharma1015 >> > > > -- > Vivek Sharma > Mobile: +919953582034 > Skype: vivek.sharma1015 > -- Vivek Sharma Mobile: +919953582034 Skype: vivek.sharma1015 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] How to automate recon-all command for multiple subjects
External Email - Use Caution I have a folder, lets name xyz which contains .nii file. Now I want to run recon-all for all the files in that folder. Please let me know how I can do that. On Tue, Nov 20, 2018 at 11:40 AM Vivek Sharma wrote: > I'm trying to run this code but it's not working. What should be $i in > the code? > On Mon, Nov 19, 2018 at 9:15 PM Bruce Fischl > wrote: > >> or you could do that all on a single line: >> >> recon-all -i $SUBJECTS_DIR/$i/ -s $i -all >> >> cheers >> Bruce >> >> On Mon, 19 Nov 2018, >> Alex Hanganu >> wrote: >> >> > >> > External Email - Use Caution >> > >> > HI Vivek, >> > you probably need 2 steps, first registration, second recon-all. >> Something >> > like: >> > >> > ... >> > do >> >recon-all -i $SUBJECTS_DIR/$i/ -s $i >> >recon-all -all -subjid $i >> > >> > >> > I didn't check if the scrips runs. That's the general structure. >> > >> > Best, >> > Alex >> > >> > Le lun. 19 nov. 2018, à 06 h 26, Vivek Sharma < >> vivek.sharma1...@gmail.com> a >> > écrit : >> > >> > External Email - Use Caution >> > >> > Hi, >> > I'm using freesurfer to generate head surfaces using MRI file. >> > I want to execute recon-all command for number of subjects, but unable >> > to run it. >> > The script I'm using is: >> > >> > for i in `cat *subs.txt*` >> > do >> > recon-all -s $i -all -qcache >> > done >> > >> > subs.txt contains the name of folder that contains .nii file. >> > The scripts ends with the following error: >> > >> > ERROR: no run data found in >> > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri. Make sure to >> > have a volume called 001.mgz in >> > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri/orig. >> > If you have a second run of data call it 002.mgz, etc. >> > See also: >> > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion >> > Linux cblhost 4.4.0-83-generic #106~14.04.1-Ubuntu SMP Mon Jun 26 >> > 18:10:19 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux >> > >> > Please let me know how I can run recon-all for multiple subjects. >> > Thank you. >> > >> > -- >> > Vivek Sharma >> > Mobile: +919953582034 >> > Skype: vivek.sharma1015 >> > ___ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> >___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > Vivek Sharma > Mobile: +919953582034 > Skype: vivek.sharma1015 > -- Vivek Sharma Mobile: +919953582034 Skype: vivek.sharma1015 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] How to automate recon-all command for multiple subjects
External Email - Use Caution I'm trying to run this code but it's not working. What should be $i in the code? On Mon, Nov 19, 2018 at 9:15 PM Bruce Fischl wrote: > or you could do that all on a single line: > > recon-all -i $SUBJECTS_DIR/$i/ -s $i -all > > cheers > Bruce > > On Mon, 19 Nov 2018, > Alex Hanganu > wrote: > > > > > External Email - Use Caution > > > > HI Vivek, > > you probably need 2 steps, first registration, second recon-all. > Something > > like: > > > > ... > > do > >recon-all -i $SUBJECTS_DIR/$i/ -s $i > >recon-all -all -subjid $i > > > > > > I didn't check if the scrips runs. That's the general structure. > > > > Best, > > Alex > > > > Le lun. 19 nov. 2018, à 06 h 26, Vivek Sharma < > vivek.sharma1...@gmail.com> a > > écrit : > > > > External Email - Use Caution > > > > Hi, > > I'm using freesurfer to generate head surfaces using MRI file. > > I want to execute recon-all command for number of subjects, but unable > > to run it. > > The script I'm using is: > > > > for i in `cat *subs.txt*` > > do > > recon-all -s $i -all -qcache > > done > > > > subs.txt contains the name of folder that contains .nii file. > > The scripts ends with the following error: > > > > ERROR: no run data found in > > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri. Make sure to > > have a volume called 001.mgz in > > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri/orig. > > If you have a second run of data call it 002.mgz, etc. > > See also: > > http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion > > Linux cblhost 4.4.0-83-generic #106~14.04.1-Ubuntu SMP Mon Jun 26 > > 18:10:19 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux > > > > Please let me know how I can run recon-all for multiple subjects. > > Thank you. > > > > -- > > Vivek Sharma > > Mobile: +919953582034 > > Skype: vivek.sharma1015 > > ___ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Vivek Sharma Mobile: +919953582034 Skype: vivek.sharma1015 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] How to automate recon-all command for multiple subjects
or you could do that all on a single line: recon-all -i $SUBJECTS_DIR/$i/ -s $i -all cheers Bruce On Mon, 19 Nov 2018, Alex Hanganu wrote: External Email - Use Caution HI Vivek, you probably need 2 steps, first registration, second recon-all. Something like: ... do recon-all -i $SUBJECTS_DIR/$i/ -s $i recon-all -all -subjid $i I didn't check if the scrips runs. That's the general structure. Best, Alex Le lun. 19 nov. 2018, à 06 h 26, Vivek Sharma a écrit : External Email - Use Caution Hi, I'm using freesurfer to generate head surfaces using MRI file. I want to execute recon-all command for number of subjects, but unable to run it. The script I'm using is: for i in `cat *subs.txt*` do recon-all -s $i -all -qcache done subs.txt contains the name of folder that contains .nii file. The scripts ends with the following error: ERROR: no run data found in /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri. Make sure to have a volume called 001.mgz in /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri/orig. If you have a second run of data call it 002.mgz, etc. See also: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion Linux cblhost 4.4.0-83-generic #106~14.04.1-Ubuntu SMP Mon Jun 26 18:10:19 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux Please let me know how I can run recon-all for multiple subjects. Thank you. -- Vivek Sharma Mobile: +919953582034 Skype: vivek.sharma1015 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] How to automate recon-all command for multiple subjects
External Email - Use Caution HI Vivek, you probably need 2 steps, first registration, second recon-all. Something like: ... do recon-all -i $SUBJECTS_DIR/$i/ -s $i recon-all -all -subjid $i I didn't check if the scrips runs. That's the general structure. Best, Alex Le lun. 19 nov. 2018, à 06 h 26, Vivek Sharma a écrit : > External Email - Use Caution > > Hi, > I'm using freesurfer to generate head surfaces using MRI file. > I want to execute recon-all command for number of subjects, but unable to > run it. > The script I'm using is: > > for i in `cat *subs.txt*` > do > recon-all -s $i -all -qcache > done > > subs.txt contains the name of folder that contains .nii file. > The scripts ends with the following error: > > ERROR: no run data found in > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri. Make sure to > have a volume called 001.mgz in > /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri/orig. > If you have a second run of data call it 002.mgz, etc. > See also: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion > Linux cblhost 4.4.0-83-generic #106~14.04.1-Ubuntu SMP Mon Jun 26 18:10:19 > UTC 2017 x86_64 x86_64 x86_64 GNU/Linux > > Please let me know how I can run recon-all for multiple subjects. > Thank you. > > -- > Vivek Sharma > Mobile: +919953582034 > Skype: vivek.sharma1015 > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] How to automate recon-all command for multiple subjects
External Email - Use Caution Hi, I'm using freesurfer to generate head surfaces using MRI file. I want to execute recon-all command for number of subjects, but unable to run it. The script I'm using is: for i in `cat *subs.txt*` do recon-all -s $i -all -qcache done subs.txt contains the name of folder that contains .nii file. The scripts ends with the following error: ERROR: no run data found in /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri. Make sure to have a volume called 001.mgz in /cblhome/vivek/freesurfer/subjects/sub-CC110033_T1w/mri/orig. If you have a second run of data call it 002.mgz, etc. See also: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Conversion Linux cblhost 4.4.0-83-generic #106~14.04.1-Ubuntu SMP Mon Jun 26 18:10:19 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux Please let me know how I can run recon-all for multiple subjects. Thank you. -- Vivek Sharma Mobile: +919953582034 Skype: vivek.sharma1015 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer