[Freesurfer] Longitudinal Stream on HCP Data

[Timothy Hendrickson]

Aww thank you for clarifying Michael. I definitely misread Matthew's post.

-Tim

Timothy Hendrickson
Department of Psychiatry
University of Minnesota
Mobile: 507-259-3434 (texts okay)
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Re: [Freesurfer] Longitudinal Stream on HCP Data

[Bruce Fischl]

yes, thanks Mike, that is true as well. The new V6 works very nicely on 
data that is higher res than 1mm

On Tue, 8 Nov 2016, Harms, Michael wrote:



To clarify, in that post, Matt wasn’t saying that FS was going to
incorporate myelin maps.  Rather, the new (v6) version of FS, with its
support of data acquired with < 1 mm resolution, may eliminate the need for
some of the steps that are currently the HCP Pipelines that are there to
take full advantage of higher resolution structural acquisitions.

cheers,
-MH

-- 
Michael Harms, Ph.D.
---
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave. Tel: 314-747-6173
St. Louis, MO  63110 Email: mha...@wustl.edu

From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Timothy
Hendrickson <hendr...@umn.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Tuesday, November 8, 2016 at 9:15 AM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Longitudinal Stream on HCP Data

Hi Freesurfer/HCP experts,

I am curious if there is a way to incorporate HCP data (i.e. myelin maps)
into the FreeSurfer processing stream.
Matthew Glasser mentioned in a post on the HCP mailing list about a month
back that this is being actively worked on by FreeSurfer:
http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html.
Are there any workflows or development versions that I can download in order
to perform something like this.

Respectfully,

-Tim

Timothy Hendrickson
Department of Psychiatry
University of Minnesota
Mobile: 507-259-3434 (texts okay)

 





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Re: [Freesurfer] Longitudinal Stream on HCP Data

[Bruce Fischl]

Hi Tim

for a long time we have had a post-processing routine that uses T2 or 
FLAIR images for post-hoc surface deformation. This existed long before the 
HCP, although I did tweak it for the Wash U HCP acquisition to make it 
perform better. The upcoming v6 has the overall best performance with the 
T2s I believe


cheers
Bruce

On Tue, 8 Nov 2016, Timothy Hendrickson wrote:

> Hi Freesurfer/HCP experts,
> 
> I am curious if there is a way to incorporate HCP data (i.e. myelin maps)
> into the FreeSurfer processing stream.
> Matthew Glasser mentioned in a post on the HCP mailing list about a month
> back that this is being actively worked on by FreeSurfer:
> http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html.
> Are there any workflows or development versions that I can download in order
> to perform something like this.
> 
> Respectfully,
> 
> -Tim
> 
> Timothy Hendrickson
> Department of Psychiatry
> University of Minnesota
> Mobile: 507-259-3434 (texts okay)
> 
>
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Re: [Freesurfer] Longitudinal Stream on HCP Data

[Harms, Michael]

To clarify, in that post, Matt wasn’t saying that FS was going to incorporate 
myelin maps.  Rather, the new (v6) version of FS, with its support of data 
acquired with < 1 mm resolution, may eliminate the need for some of the steps 
that are currently the HCP Pipelines that are there to take full advantage of 
higher resolution structural acquisitions.

cheers,
-MH

--
Michael Harms, Ph.D.
---
Conte Center for the Neuroscience of Mental Disorders
Washington University School of Medicine
Department of Psychiatry, Box 8134
660 South Euclid Ave. Tel: 314-747-6173
St. Louis, MO  63110 Email: mha...@wustl.edu

From: 
<freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
 on behalf of Timothy Hendrickson <hendr...@umn.edu<mailto:hendr...@umn.edu>>
Reply-To: Freesurfer support list 
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Tuesday, November 8, 2016 at 9:15 AM
To: "freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>" 
<freesurfer@nmr.mgh.harvard.edu<mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] Longitudinal Stream on HCP Data

Hi Freesurfer/HCP experts,

I am curious if there is a way to incorporate HCP data (i.e. myelin maps) into 
the FreeSurfer processing stream.
Matthew Glasser mentioned in a post on the HCP mailing list about a month back 
that this is being actively worked on by FreeSurfer: 
http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html.<http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html>
Are there any workflows or development versions that I can download in order to 
perform something like this.

Respectfully,

-Tim

Timothy Hendrickson
Department of Psychiatry
University of Minnesota
Mobile: 507-259-3434 (texts okay)


The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.
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[Freesurfer] Longitudinal Stream on HCP Data

[Timothy Hendrickson]

Hi Freesurfer/HCP experts,

I am curious if there is a way to incorporate HCP data (i.e. myelin maps)
into the FreeSurfer processing stream.
Matthew Glasser mentioned in a post on the HCP mailing list about a month
back that this is being actively worked on by FreeSurfer:
http://www.mail-archive.com/hcp-users@humanconnectome.org/msg03477.html.

Are there any workflows or development versions that I can download in
order to perform something like this.

Respectfully,

-Tim

Timothy Hendrickson
Department of Psychiatry
University of Minnesota
Mobile: 507-259-3434 (texts okay)
___
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Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.