[Freesurfer] Nifti surface to FreeSurfer surface

2010-10-22 Thread Alexander Hunold
Dear experts,

 

I got BEM surfaces out of the BET tool from the FSL package. The surface
files are in nifti format (*.nii.gz).
Now I wonder if there is any opportunity to convert nifti surfaces to
FreeSurfer surface in surf format (*.surf)?

I appreciate any hint.

Thank you so much in advance.

 

Sincerely,

Alexander

 

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.


Re: [Freesurfer] Nifti surface to FreeSurfer surface

2010-10-22 Thread Nick Schmansky
use mri_binarize to set each brain voxel value to the same value (maybe
bet does this), then use something like:

mri_tesselate mybrainmask.nii.gz 127 mybrainmask.surf

where '127' happens to be voxel value used in the binarization.

n.


On Fri, 2010-10-22 at 15:08 -0600, Alexander Hunold wrote:
 Dear experts,
 
  
 
 I got BEM surfaces out of the BET tool from the FSL package. The
 surface files are in nifti format (*.nii.gz).
 Now I wonder if there is any opportunity to convert nifti surfaces to
 FreeSurfer surface in surf format (*.surf)?
 
 I appreciate any hint.
 
 Thank you so much in advance.
 
  
 
 Sincerely,
 
 Alexander
 
  
 
 
 ___
 Freesurfer mailing list
 Freesurfer@nmr.mgh.harvard.edu
 https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.