[Freesurfer] Orientation/Primary-Slice-Direction

2013-08-19 Thread Mark Plantz
Hello freesurfers,

   I have an image that is in RAS orientation with the axial primary slice
direction. Is there anyway to change this to LIA orientation with the
coronal primary slice direction? I am assuming mri_convert would work, but
I'm not sure which flags to use.

Thanks in advance.

MP
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Re: [Freesurfer] Orientation/Primary-Slice-Direction

2013-08-19 Thread Douglas N Greve
try setting the orientation string to LIA

On 08/19/2013 11:15 AM, Mark Plantz wrote:
 Hello freesurfers,

I have an image that is in RAS orientation with the axial primary 
 slice direction. Is there anyway to change this to LIA orientation 
 with the coronal primary slice direction? I am assuming mri_convert 
 would work, but I'm not sure which flags to use.

 Thanks in advance.

 MP


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