I apologize. This is the correct info:data_type INT16dim1 280dim2 240dim3 240dim4 1datatype 4pixdim1 0.5999984741pixdim2 1.0416666269pixdim3 1.0416666269pixdim4 0.0000000000cal_max 0.0000cal_min 0.0000file_type NIFTI-1+
----Messaggio originale---- Da: std...@virgilio.it Data: 30-mag-2013 0.30 A: <sebastian.moell...@rwth-aachen.de>, "Bruce Fischl"<fis...@nmr.mgh.harvard.edu> Cc: <freesurfer@nmr.mgh.harvard.edu> Ogg: [Freesurfer] R: Re: very slow analysis with recon-all Bruce and Sebastian thank you very much. I have checked the files but they are all wrong. These are the image info: data_type FLOAT32dim1 280dim2 240dim3 240dim4 1datatype 16pixdim1 0.5999984741pixdim2 1.0416666269pixdim3 1.0416666269pixdim4 0.0000000000cal_max 0.0000cal_min 0.0000file_type NIFTI-1+ Waiting for your feedback. Thank you very much. Stefano ----Messaggio originale---- Da: sebastian.moell...@rwth-aachen.de Data: 26-mag-2013 21.31 A: "Bruce Fischl"<fis...@nmr.mgh.harvard.edu> Cc: <std...@virgilio.it>, <freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] very slow analysis with recon-all Hi Stefano, hi Bruce, sorry to partly high-jack your thread Stafano. In my experience with NHPs I often encounter problems like included cerebellum, so I routinely check the filled.mgz before actually running the surface recon, to confirm that the cerebellum (or other non-white matter) is NOT part of either hemisphere. (In my cases typically I then have to either edit the wm.mgz, the brain mask, or the pons cutting plane, but I guess that is NHP specific). Now wouldn't that filled.mgz check not also work for human recons? best Sebastian On May 26, 2013, at 21:13 , Bruce Fischl wrote: > Hi Stefano > > a defect with over 60K vertices is more than 1/2 the size of a typical > hemisphere, so something has gone badly wrong. Have you checked the skull > stripping? The aseg? The talairach? There shouldn't be a defect that big - > you will need to figure out why > > cheers > Bruce > On Sun, 26 May 2013, std...@virgilio.it wrote: > >> Hi list, >> I'm running recon-all on two T1 but the command is for two days >> on CORRECTING DEFECT 11 (vertices=55538, convex hull=7811). >> Is it ok? What's happen? >> Thanks, >> Stefano >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail.
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