Hi Stefano
we need more details than that if you want us to help you. Can you load
them into freeview? If so what is wrong with the display?
cheers
Bruce
On Thu, 21 May
2015, std...@virgilio.it wrote:
Thanks, I have resolved for tksurfer. However, in freeviewer I'm not able
visualize correctly the labels of perirhinal and entorhinal in aparc+aseg.
Stefano
Messaggio originale
Da: fis...@nmr.mgh.harvard.edu
Data: 21-mag-2015 21.48
A: std...@virgilio.it, Freesurfer support
listfreesurfer@nmr.mgh.harvard.edu
Ogg: Re: [Freesurfer] R: Re: Hippo-subfields visualization
sure, just load the labels into tksurfer or freeview
On Thu, 21 May 2015,
std...@virgilio.it wrote:
Thanks Eugenio. Point A is resolved: some typos in line command.But, I do
not found the label of perirhinal in aparc+aseg.
Is possible to visualize the enthorhinal, perirhinal and parahippocampus
on
a surface?
Stefano
Messaggio originale
Da: e.igles...@bcbl.eu
Data: 20-mag-2015 23.05
A: std...@virgilio.it, Freesurfer support
listfreesurfer@nmr.mgh.harvard.edu
Ogg: Re: [Freesurfer] Hippo-subfields visualization
Hi Stefano,
What error do you exactly get when you run the command to visualize the
segmentation? If you didn't get any error message, please bear in mind
that,
because it'd loading a bunch of files simultaneously, it takes a while to
load.
Regarding B and C: you can extract volumetric masks for cortical
structures
from the aseg+aparc volume.
/Eugenio
Juan Eugenio Iglesias
Postdoctoral researcher BCBL
www.jeiglesias.com
www.bcbl.eu
Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer
- Original Message -
From: std...@virgilio.it
To: freesurfer@nmr.mgh.harvard.edu
Sent: Wednesday, May 20, 2015 9:14:05 PM
Subject: [Freesurfer] Hippo-subfields visualization
Hi list,
I'm using version 5.3 and I have performed hippo-subfields analysis.
A- I'd like to visualize the mask of each subfield on the T1.
In subid/mri, I run the command line above:
freeview nu.mgz -p-labels posterior_left_* posterior_Left-Hippocampus.mgz
-p-labels posterior_right_* posterior_Right-Hippocampus.mgz -p-prefix
posterior_ -p-lut $FREESURFER_HOME/FreeSurferColorLUT.txt
but I can not visualize the subfields ROI on the T1
B- How I can visualize the entorhinal, perirhinal and parahippocampal on
T1
of a subjects?
C- I would like to have the ROI entorhinal, perirhinal and parahippocampal
for each subject and use it as masks. How can I do?
Thanks,
Stefano
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