[Freesurfer] R: Re: mris_calc erroe in recon-all
Thanks. These are the output[iMac-di-Stefano:Con28/SUBJECTS_DIR/surf] Stefano% mris_calc lh.area stats Size [ 126850 ] Min@(index) [ -0.322716 (56402) ] Max@(index) [ 12.367171 (123284) ] Mean [ 0.587518 ] Std [ 0.402374 ] Sum [ 74526.703125 ] Prod [ 0.00 ][iMac-di-Stefano:Con28/SUBJECTS_DIR/surf] Stefano% mris_calc lh.area.pial stats Size [ 126355 ] Min@(index) [ 0.00 (97676) ] Max@(index) [ 22.833410 (119901) ] Mean [ 0.785660 ] Std [ 0.738523 ] Sum [ 99272.054688 ] Prod [ 0.00 ] but I do not understand what's happen. Stefano Messaggio originale Da: rudo...@nmr.mgh.harvard.edu Data: 12-set-2013 14.49 A: std...@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] mris_calc erroe in recon-all The error would indicate that the number of elements in 'lh.area' and 'lh.area.pial' are not the same. You can check this also with mris_calc: mris_calc lh.area stats mris_calc lh.area.pial stats which will provide some basic statistical output, including the size (i.e. number of elements) of each. The sizes have to match in order to add. HTH -=R On 9/12/13 02:56 , std...@virgilio.it wrote: Hi list, I have a problem during recon-all #@# Surf Volume lh Thu Sep 12 08:25:31 CEST 2013 /Applications/freesurfer/subjects/subject_prova/Con28/SUBJECTS_DIR/surf \n mris_calc -o lh.area.mid lh.area add lh.area.pial \n mris_calc: Sorry, but I seem to have encountered an error. While checking on input filetype sizes, I found a size mismatch, i.e. len(input1)!=len(input2) Darwin iMac-di-Stefano.local 12.4.0 Darwin Kernel Version 12.4.0: Wed May 1 17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64 x86_64 recon-all -s SUBJECTS_DIR exited with ERRORS at Thu Sep 12 08:25:31 CEST 2013 For more details, see the log file /Applications/freesurfer/subjects/subject_prova/Con28/SUBJECTS_DIR/scripts/recon-all.log To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting Thanks, Stefano ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street, Charlestown, MA 02129 USA The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] R: Re: mris_calc erroe in recon-all
The file 'lh.area' contains 126850 elements. The file 'lh.area.pial' contains 126355 elements. You cannot add them together since they have different sizes. On 9/12/13 11:14 , std...@virgilio.it wrote: Thanks. These are the output [iMac-di-Stefano:Con28/SUBJECTS_DIR/surf] Stefano% mris_calc lh.area stats Size [ 126850 ] Min@(index)[ -0.322716 (56402) ] Max@(index) [ 12.367171 (123284) ] Mean [ 0.587518 ] Std [ 0.402374 ] Sum [ 74526.703125 ] Prod [ 0.00 ] [iMac-di-Stefano:Con28/SUBJECTS_DIR/surf] Stefano% mris_calc lh.area.pial stats Size [ 126355 ] Min@(index) [ 0.00 (97676) ] Max@(index) [ 22.833410 (119901) ] Mean [ 0.785660 ] Std [ 0.738523 ] Sum [ 99272.054688 ] Prod [ 0.00 ] but I do not understand what's happen. Stefano Messaggio originale Da: rudo...@nmr.mgh.harvard.edu Data: 12-set-2013 14.49 A: std...@virgilio.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] mris_calc erroe in recon-all The error would indicate that the number of elements in 'lh.area' and 'lh.area.pial' are not the same. You can check this also with mris_calc: mris_calc lh.area stats mris_calc lh.area.pial stats which will provide some basic statistical output, including the size (i.e. number of elements) of each. The sizes have to match in order to add. HTH -=R On 9/12/13 02:56 , std...@virgilio.it wrote: Hi list, I have a problem during recon-all #@# Surf Volume lh Thu Sep 12 08:25:31 CEST 2013 /Applications/freesurfer/subjects/subject_prova/Con28/SUBJECTS_DIR/surf \n mris_calc -o lh.area.mid lh.area add lh.area.pial \n mris_calc: Sorry, but I seem to have encountered an error. While checking on input filetype sizes, I found a size mismatch, i.e. len(input1)!=len(input2) Darwin iMac-di-Stefano.local 12.4.0 Darwin Kernel Version 12.4.0: Wed May 1 17:57:12 PDT 2013; root:xnu-2050.24.15~1/RELEASE_X86_64 x86_64 recon-all -s SUBJECTS_DIR exited with ERRORS at Thu Sep 12 08:25:31 CEST 2013 For more details, see the log file /Applications/freesurfer/subjects/subject_prova/Con28/SUBJECTS_DIR/scripts/recon-all.log To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting Thanks, Stefano ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street, Charlestown, MA 02129 USA The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Rudolph Pienaar, M.Eng, D.Eng / email: rudo...@nmr.mgh.harvard.edu MGH/MIT/HMS Athinoula A. Martinos Center for Biomedical Imaging 149 (2301) 13th Street, Charlestown, MA 02129 USA ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
