[Freesurfer] Re: mris_glm-sess (fwd)

2004-10-04 Thread Trinity Urban 
How do I view the sigt-average7-rh.w? Using surf-sess? The different 
subject groups should show activation in blue plus and green circles 
accorging to my fsgd file?

surf-sess -analysis individual_anal_FE -contrast allvfix_de -map sigt 
-hemi lh -d . -s [trgsubj ??]

Thank you so much for all of your help.
--
On Mon, 4 Oct 2004, Doug Greve wrote:
There should be only one output file (sigt-average7-rh.w). The way you
are calling the program, sigt-average7-rh.w should be located in the
same directory that you are running the program from.
doug

On Mon, 4 Oct 2004, Trinity Urban wrote:
The output should be sigt-average7-rh.w
(individual_anal_FE/allvfix_de/sigt-average7-rh.w -for each subject),
right? If so, I'm still not getting output files. What could be the
problem?
mris_glm-sess -hemi rh -projfrac 0.5 -fsgd test.fsgd -sf test.sessid -a
individual_anal_FE -contrast allvfix_de --trgsubj average7 --gcv 1 -1 0 0
--sigt ./sigt-average7-rh.w paint

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
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[Freesurfer] Re: mris_glm-sess (fwd)

2004-10-04 Thread Doug Greve 

There should be only one output file (sigt-average7-rh.w). The way you
are calling the program, sigt-average7-rh.w should be located in the
same directory that you are running the program from.

doug




On Mon, 4 Oct 2004, Trinity Urban wrote:

> The output should be sigt-average7-rh.w 
> (individual_anal_FE/allvfix_de/sigt-average7-rh.w -for each subject), 
> right? If so, I'm still not getting output files. What could be the 
> problem?
> 
> mris_glm-sess -hemi rh -projfrac 0.5 -fsgd test.fsgd -sf test.sessid -a 
> individual_anal_FE -contrast allvfix_de --trgsubj average7 --gcv 1 -1 0 0 
> --sigt ./sigt-average7-rh.w paint
> 
> 

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358 
Fax: 617-726-7422

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[Freesurfer] Re: mris_glm-sess (fwd)

2004-10-04 Thread Trinity Urban 
The output should be sigt-average7-rh.w 
(individual_anal_FE/allvfix_de/sigt-average7-rh.w -for each subject), 
right? If so, I'm still not getting output files. What could be the 
problem?

mris_glm-sess -hemi rh -projfrac 0.5 -fsgd test.fsgd -sf test.sessid -a 
individual_anal_FE -contrast allvfix_de --trgsubj average7 --gcv 1 -1 0 0 
--sigt ./sigt-average7-rh.w paint

--
On Mon, 4 Oct 2004, Doug Greve wrote:
Hi Trinity,
I think the problem is with a quirk in how paint (ie, .w) files are
stored. Try adding ./ in front of the .w file name:
mris_glm-sess -hemi rh -projfrac 0.5 -fsgd test.fsgd -sf test.sessid
-a individual_anal_FE -contrast allvfix_de --trgsubj average7 --gcv 1
-1 0 0 --sigt ./sigt-average7-rh.w paint
Doug
On Mon, 4 Oct 2004, Trinity Urban wrote:
Hi Doug -
Any luck with my mris_glm-sess problem?
Thank you!!

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
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[Freesurfer] Re: mris_glm-sess (fwd)

2004-10-04 Thread Doug Greve 

Hi Trinity,

I think the problem is with a quirk in how paint (ie, .w) files are
stored. Try adding ./ in front of the .w file name:

mris_glm-sess -hemi rh -projfrac 0.5 -fsgd test.fsgd -sf test.sessid
-a individual_anal_FE -contrast allvfix_de --trgsubj average7 --gcv 1
-1 0 0 --sigt ./sigt-average7-rh.w paint 

Doug


On Mon, 4 Oct 2004, Trinity Urban wrote:

> Hi Doug -
> 
> Any luck with my mris_glm-sess problem?
> 
> Thank you!!
> 
> 

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358 
Fax: 617-726-7422

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[Freesurfer] Re: mris_glm-sess (fwd)

2004-10-04 Thread Trinity Urban 
Hi Doug -
Any luck with my mris_glm-sess problem?
Thank you!!
--
On Fri, 1 Oct 2004, Trinity Urban wrote:
i've attached the .fsgd, .sessid, and .log file. the data is in 
/space/curmudgeon/4/users/trinity/ALCFAST/

thank you!!
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