Re: [Freesurfer] Regarding cortical thickness
Dear prof. Bruce Thanks once again. As you clarify that each brain has different number of vertices. But still I want to ask the followings: 1) How to map these on some standard template say Freesurfer template and then retrieve cortical thickness for each vertices? 2) How to identify the location of each retrieved cortical vertices? Kindly guide me for the same. I'll be highly thankful to you. On Wed, Nov 21, 2012 at 8:19 PM, Bruce Fischl fis...@nmr.mgh.harvard.eduwrote: yes, each brain has a different number, sufficient to get about 1mm isotropic resolution. You can use our spherical averaging to map them to a common coordinate system with the same # of vertices if you want (I think mri_surf2surf will do this) cheers Bruce On Wed, 21 Nov 2012, Bharti Rana wrote: I am Bharti, a M.Tech./Ph.D student at School of Computer Systems Sciences, Jawaharlal Nehru University, New Delhi, India. My area of interest is pattern recognition and image processing. In one of my research work, i used freely available freesurfer software to find cortical thickness using recon-all -all command. But, while retrieving cortcal thickness maps using read_curv() function, i am getting different number of vertices for different brains. Are different number of cortical vertices possible for two different brains? I have gone through FAQ provided by Freesurfer but i did not find any related answer. Kindly clarify. Thanks in advance. -- Best Regards Bharti M.Tech./Ph.D. School of Computer Systems Sciences Jawaharlal Nehru University NEW DELHI, INDIA The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Best Regards Bharti M.Tech./Ph.D. SCSS JNU, NEW DELHI ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] Regarding cortical thickness
I am Bharti, a M.Tech./Ph.D student at School of Computer Systems Sciences, Jawaharlal Nehru University, New Delhi, India. My area of interest is pattern recognition and image processing. In one of my research work, i used freely available freesurfer software to find cortical thickness using recon-all -all command. But, while retrieving cortcal thickness maps using read_curv() function, i am getting different number of vertices for different brains. Are different number of cortical vertices possible for two different brains? I have gone through FAQ provided by Freesurfer but i did not find any related answer. Kindly clarify. Thanks in advance. -- Best Regards Bharti M.Tech./Ph.D. School of Computer Systems Sciences Jawaharlal Nehru University NEW DELHI, INDIA ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Regarding cortical thickness
yes, each brain has a different number, sufficient to get about 1mm isotropic resolution. You can use our spherical averaging to map them to a common coordinate system with the same # of vertices if you want (I think mri_surf2surf will do this) cheers Bruce On Wed, 21 Nov 2012, Bharti Rana wrote: I am Bharti, a M.Tech./Ph.D student at School of Computer Systems Sciences, Jawaharlal Nehru University, New Delhi, India. My area of interest is pattern recognition and image processing. In one of my research work, i used freely available freesurfer software to find cortical thickness using recon-all -all command. But, while retrieving cortcal thickness maps using read_curv() function, i am getting different number of vertices for different brains. Are different number of cortical vertices possible for two different brains? I have gone through FAQ provided by Freesurfer but i did not find any related answer. Kindly clarify. Thanks in advance. -- Best Regards Bharti M.Tech./Ph.D. School of Computer Systems Sciences Jawaharlal Nehru University NEW DELHI, INDIA ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.