Re: [Freesurfer] Special image protocol
hard to say without seeing all the parameters (which look like they were cropped out). It does seem correct. If you acquire one and send it to me I'll take a look. Probably best to send it directly to me, not on list though cheers Bruce On Thu, 28 Mar 2019, Mustafa Amin wrote: >External Email - Use Caution > > Hi Bruce, > > The MRI operator gave me this picture she needs to know whether we are on the > right track. Is this the correct protocol? Thank you in advance. > > Yours faithfully, ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution Hi Bruce, The MRI operator gave me this picture she needs to know whether we are on the right track. Is this the correct protocol? Thank you in advance. Yours faithfully, Mustafa M. Amin Department of Psychiatry Faculty of Medicine University of Sumatera Utara > On 27 Mar 2019, at 20.49, Bruce Fischl wrote: > > I see. Then they will have mprage sequences and you should be set > On Wed, 27 > Mar 2019, mustafa amin wrote: > >> External Email - Use Caution >> >> I am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in >> advance. >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >>> On 26 Mar 2019, at 21.24, Bruce Fischl wrote: >>> >>> Hi Mustafa >>> >>> what type of scanner are you using? A normal mprage should be fine. >>> Typically we acquire sagittaly as that is the shortest air-to-air >>> direction. Make sure that the acquisition is 3D and around 1mm isotropic. >>> We may have a protocol you can use depending on your scanner hardware and >>> software >>> cheers >>> Bruce >>> >>> On Tue, 26 Mar 2019, mustafa amin wrote: External Email - Use Caution Dear Douglas, I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. > wrote: > > I highly recommend the multiecho mprage at about 1mm. > >> On 2/21/19 10:30 AM, Bruce Fischl wrote: >> Hi Mustafa >> >> FreeSurfer should work fine with many image protocols. If you have the >> freedom to choose one, Andre van der Kouwe (ccd) can point you at the >> sequence he developed for Siemens. If you are using a different scanner >> give us the details and we can recommend something >> >> cheers >> Bruce >> >> >> On Thu, 21 Feb >> 2019, mustafa amin wrote: >> >>> External Email - Use Caution >>> >>> Dear member, >>> >>> I am really new with this freesurfer, just need to ask 1 question. Is >>> there a special image protocol before running the MRI and then upload >>> it to freesurfer? Please share your thoughts. Thank you for your kind >>> attention and cooperation. >>> >>> Yours faithfully, >>> >>> Mustafa M. Amin >>> Consultant Psychiatrist in Biological Psychiatry >>> Department of Psychiatry >>> Faculty of Medicine >>> Universitas Sumatera Utara >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution Thank you Bruce I will tell them Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 27 Mar 2019, at 20.49, Bruce Fischl wrote: > > I see. Then they will have mprage sequences and you should be set > On Wed, 27 > Mar 2019, mustafa amin wrote: > >> External Email - Use Caution >> >> I am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in >> advance. >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >>> On 26 Mar 2019, at 21.24, Bruce Fischl wrote: >>> >>> Hi Mustafa >>> >>> what type of scanner are you using? A normal mprage should be fine. >>> Typically we acquire sagittaly as that is the shortest air-to-air >>> direction. Make sure that the acquisition is 3D and around 1mm isotropic. >>> We may have a protocol you can use depending on your scanner hardware and >>> software >>> cheers >>> Bruce >>> >>> On Tue, 26 Mar 2019, mustafa amin wrote: External Email - Use Caution Dear Douglas, I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. > wrote: > > I highly recommend the multiecho mprage at about 1mm. > >> On 2/21/19 10:30 AM, Bruce Fischl wrote: >> Hi Mustafa >> >> FreeSurfer should work fine with many image protocols. If you have the >> freedom to choose one, Andre van der Kouwe (ccd) can point you at the >> sequence he developed for Siemens. If you are using a different scanner >> give us the details and we can recommend something >> >> cheers >> Bruce >> >> >> On Thu, 21 Feb >> 2019, mustafa amin wrote: >> >>> External Email - Use Caution >>> >>> Dear member, >>> >>> I am really new with this freesurfer, just need to ask 1 question. Is >>> there a special image protocol before running the MRI and then upload >>> it to freesurfer? Please share your thoughts. Thank you for your kind >>> attention and cooperation. >>> >>> Yours faithfully, >>> >>> Mustafa M. Amin >>> Consultant Psychiatrist in Biological Psychiatry >>> Department of Psychiatry >>> Faculty of Medicine >>> Universitas Sumatera Utara >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution Many thanks Bruce Cheers! Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 27 Mar 2019, at 20.48, Bruce Fischl wrote: > > no, it does not need contrast (in fact contrast would make it > more difficult for FreeSurfer to process the data) > > cheers > Bruce > > > On Wed, 27 > Mar 2019, mustafa amin wrote: > >> External Email - Use Caution >> >> Hi Bruce, >> >> I mentioned and showed the MP-RAGE protocol along with 3D acquisition, >> sagittal and 1 mm isotropic. According to the radiologist and the operator >> it needs contrast that will be injected to the patient. Is it true? Please >> confirm and share some thoughts with me. Thank you in advance. >> >> Yours faithfully, >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >>> On 26 Mar 2019, at 21.24, Bruce Fischl wrote: >>> >>> Hi Mustafa >>> >>> what type of scanner are you using? A normal mprage should be fine. >>> Typically we acquire sagittaly as that is the shortest air-to-air >>> direction. Make sure that the acquisition is 3D and around 1mm isotropic. >>> We may have a protocol you can use depending on your scanner hardware and >>> software >>> cheers >>> Bruce >>> >>> On Tue, 26 Mar 2019, mustafa amin wrote: External Email - Use Caution Dear Douglas, I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. > wrote: > > I highly recommend the multiecho mprage at about 1mm. > >> On 2/21/19 10:30 AM, Bruce Fischl wrote: >> Hi Mustafa >> >> FreeSurfer should work fine with many image protocols. If you have the >> freedom to choose one, Andre van der Kouwe (ccd) can point you at the >> sequence he developed for Siemens. If you are using a different scanner >> give us the details and we can recommend something >> >> cheers >> Bruce >> >> >> On Thu, 21 Feb >> 2019, mustafa amin wrote: >> >>> External Email - Use Caution >>> >>> Dear member, >>> >>> I am really new with this freesurfer, just need to ask 1 question. Is >>> there a special image protocol before running the MRI and then upload >>> it to freesurfer? Please share your thoughts. Thank you for your kind >>> attention and cooperation. >>> >>> Yours faithfully, >>> >>> Mustafa M. Amin >>> Consultant Psychiatrist in Biological Psychiatry >>> Department of Psychiatry >>> Faculty of Medicine >>> Universitas Sumatera Utara >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution Thank you very much Matt Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 27 Mar 2019, at 18.19, Glasser, Matthew wrote: > >External Email - Use Caution > > No you do not need IV contrast for running FreeSurfer. Rather it would be > better if that was not done. > > Matt. > > On 3/27/19, 12:05 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of > mustafa amin" noki4g...@yahoo.com> wrote: > >> External Email - Use Caution >> >> I am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in >> advance. >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >>> On 26 Mar 2019, at 21.24, Bruce Fischl >>> wrote: >>> >>> Hi Mustafa >>> >>> what type of scanner are you using? A normal mprage should be fine. >>> Typically we acquire sagittaly as that is the shortest air-to-air >>> direction. Make sure that the acquisition is 3D and around 1mm >>> isotropic. >>> We may have a protocol you can use depending on your scanner hardware >>> and >>> software >>> cheers >>> Bruce >>> >>> On Tue, 26 Mar 2019, mustafa amin wrote: External Email - Use Caution Dear Douglas, I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. > wrote: > > I highly recommend the multiecho mprage at about 1mm. > >> On 2/21/19 10:30 AM, Bruce Fischl wrote: >> Hi Mustafa >> >> FreeSurfer should work fine with many image protocols. If you have >> the >> freedom to choose one, Andre van der Kouwe (ccd) can point you at the >> sequence he developed for Siemens. If you are using a different >> scanner >> give us the details and we can recommend something >> >> cheers >> Bruce >> >> >> On Thu, 21 Feb >> 2019, mustafa amin wrote: >> >>> External Email - Use Caution >>> >>> Dear member, >>> >>> I am really new with this freesurfer, just need to ask 1 question. >>> Is there a special image protocol before running the MRI and then >>> upload it to freesurfer? Please share your thoughts. Thank you for >>> your kind attention and cooperation. >>> >>> Yours faithfully, >>> >>> Mustafa M. Amin >>> Consultant Psychiatrist in Biological Psychiatry >>> Department of Psychiatry >>> Faculty of Medicine >>> Universitas Sumatera Utara >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > > > ___
Re: [Freesurfer] Special image protocol
I see. Then they will have mprage sequences and you should be set On Wed, 27 Mar 2019, mustafa amin wrote: >External Email - Use Caution > > I am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in advance. > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > >> On 26 Mar 2019, at 21.24, Bruce Fischl wrote: >> >> Hi Mustafa >> >> what type of scanner are you using? A normal mprage should be fine. >> Typically we acquire sagittaly as that is the shortest air-to-air >> direction. Make sure that the acquisition is 3D and around 1mm isotropic. >> We may have a protocol you can use depending on your scanner hardware and >> software >> cheers >> Bruce >> >> >>> On Tue, 26 Mar 2019, mustafa amin wrote: >>> >>> External Email - Use Caution >>> >>> Dear Douglas, >>> >>> I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however >>> the radiologist and operator of the MRI did not understand with the term. >>> Can you explain it further please? We never done it before, here in Medan >>> Indonesia. This is the first time we are going to do it. And, do you have >>> suggestion for the MRI slice? Coronal, sagittal or else? Thank you in >>> advance. >>> >>> Yours faithfully, >>> >>> Mustafa M. Amin >>> Consultant Psychiatrist in Biological Psychiatry >>> Department of Psychiatry >>> Faculty of Medicine >>> Universitas Sumatera Utara >>> On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. wrote: I highly recommend the multiecho mprage at about 1mm. > On 2/21/19 10:30 AM, Bruce Fischl wrote: > Hi Mustafa > > FreeSurfer should work fine with many image protocols. If you have the > freedom to choose one, Andre van der Kouwe (ccd) can point you at the > sequence he developed for Siemens. If you are using a different scanner > give us the details and we can recommend something > > cheers > Bruce > > > On Thu, 21 Feb > 2019, mustafa amin wrote: > >> External Email - Use Caution >> >> Dear member, >> >> I am really new with this freesurfer, just need to ask 1 question. Is >> there a special image protocol before running the MRI and then upload it >> to freesurfer? Please share your thoughts. Thank you for your kind >> attention and cooperation. >> >> Yours faithfully, >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
no, it does not need contrast (in fact contrast would make it more difficult for FreeSurfer to process the data) cheers Bruce On Wed, 27 Mar 2019, mustafa amin wrote: >External Email - Use Caution > > Hi Bruce, > > I mentioned and showed the MP-RAGE protocol along with 3D acquisition, > sagittal and 1 mm isotropic. According to the radiologist and the operator it > needs contrast that will be injected to the patient. Is it true? Please > confirm and share some thoughts with me. Thank you in advance. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > >> On 26 Mar 2019, at 21.24, Bruce Fischl wrote: >> >> Hi Mustafa >> >> what type of scanner are you using? A normal mprage should be fine. >> Typically we acquire sagittaly as that is the shortest air-to-air >> direction. Make sure that the acquisition is 3D and around 1mm isotropic. >> We may have a protocol you can use depending on your scanner hardware and >> software >> cheers >> Bruce >> >> >>> On Tue, 26 Mar 2019, mustafa amin wrote: >>> >>> External Email - Use Caution >>> >>> Dear Douglas, >>> >>> I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however >>> the radiologist and operator of the MRI did not understand with the term. >>> Can you explain it further please? We never done it before, here in Medan >>> Indonesia. This is the first time we are going to do it. And, do you have >>> suggestion for the MRI slice? Coronal, sagittal or else? Thank you in >>> advance. >>> >>> Yours faithfully, >>> >>> Mustafa M. Amin >>> Consultant Psychiatrist in Biological Psychiatry >>> Department of Psychiatry >>> Faculty of Medicine >>> Universitas Sumatera Utara >>> On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. wrote: I highly recommend the multiecho mprage at about 1mm. > On 2/21/19 10:30 AM, Bruce Fischl wrote: > Hi Mustafa > > FreeSurfer should work fine with many image protocols. If you have the > freedom to choose one, Andre van der Kouwe (ccd) can point you at the > sequence he developed for Siemens. If you are using a different scanner > give us the details and we can recommend something > > cheers > Bruce > > > On Thu, 21 Feb > 2019, mustafa amin wrote: > >> External Email - Use Caution >> >> Dear member, >> >> I am really new with this freesurfer, just need to ask 1 question. Is >> there a special image protocol before running the MRI and then upload it >> to freesurfer? Please share your thoughts. Thank you for your kind >> attention and cooperation. >> >> Yours faithfully, >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution No you do not need IV contrast for running FreeSurfer. Rather it would be better if that was not done. Matt. On 3/27/19, 12:05 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of mustafa amin" wrote: >External Email - Use Caution > >I am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in >advance. > >Mustafa M. Amin >Consultant Psychiatrist in Biological Psychiatry >Department of Psychiatry >Faculty of Medicine >Universitas Sumatera Utara > >> On 26 Mar 2019, at 21.24, Bruce Fischl >>wrote: >> >> Hi Mustafa >> >> what type of scanner are you using? A normal mprage should be fine. >> Typically we acquire sagittaly as that is the shortest air-to-air >> direction. Make sure that the acquisition is 3D and around 1mm >>isotropic. >> We may have a protocol you can use depending on your scanner hardware >>and >> software >> cheers >> Bruce >> >> >>> On Tue, 26 Mar 2019, mustafa amin wrote: >>> >>> External Email - Use Caution >>> >>> Dear Douglas, >>> >>> I mentioned your suggestion i.e., multiecho mprage at about 1 mm, >>>however >>> the radiologist and operator of the MRI did not understand with the >>>term. >>> Can you explain it further please? We never done it before, here in >>>Medan >>> Indonesia. This is the first time we are going to do it. And, do you >>>have >>> suggestion for the MRI slice? Coronal, sagittal or else? Thank you in >>> advance. >>> >>> Yours faithfully, >>> >>> Mustafa M. Amin >>> Consultant Psychiatrist in Biological Psychiatry >>> Department of Psychiatry >>> Faculty of Medicine >>> Universitas Sumatera Utara >>> On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. wrote: I highly recommend the multiecho mprage at about 1mm. > On 2/21/19 10:30 AM, Bruce Fischl wrote: > Hi Mustafa > > FreeSurfer should work fine with many image protocols. If you have >the > freedom to choose one, Andre van der Kouwe (ccd) can point you at the > sequence he developed for Siemens. If you are using a different >scanner > give us the details and we can recommend something > > cheers > Bruce > > > On Thu, 21 Feb > 2019, mustafa amin wrote: > >> External Email - Use Caution >> >> Dear member, >> >> I am really new with this freesurfer, just need to ask 1 question. >>Is there a special image protocol before running the MRI and then >>upload it to freesurfer? Please share your thoughts. Thank you for >>your kind attention and cooperation. >> >> Yours faithfully, >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > >___ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution I am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in advance. Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 26 Mar 2019, at 21.24, Bruce Fischl wrote: > > Hi Mustafa > > what type of scanner are you using? A normal mprage should be fine. > Typically we acquire sagittaly as that is the shortest air-to-air > direction. Make sure that the acquisition is 3D and around 1mm isotropic. > We may have a protocol you can use depending on your scanner hardware and > software > cheers > Bruce > > >> On Tue, 26 Mar 2019, mustafa amin wrote: >> >> External Email - Use Caution >> >> Dear Douglas, >> >> I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however >> the radiologist and operator of the MRI did not understand with the term. >> Can you explain it further please? We never done it before, here in Medan >> Indonesia. This is the first time we are going to do it. And, do you have >> suggestion for the MRI slice? Coronal, sagittal or else? Thank you in >> advance. >> >> Yours faithfully, >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >>> On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. >>> wrote: >>> >>> I highly recommend the multiecho mprage at about 1mm. >>> On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something cheers Bruce On Thu, 21 Feb 2019, mustafa amin wrote: > External Email - Use Caution > > Dear member, > > I am really new with this freesurfer, just need to ask 1 question. Is > there a special image protocol before running the MRI and then upload it > to freesurfer? Please share your thoughts. Thank you for your kind > attention and cooperation. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution Thank you Douglas. I have showed it to the radiologist and the operator. They said it needs contrast that will be injected to the patients. Is it true? Please confirm. Thank you in advance. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 27 Mar 2019, at 05.12, Greve, Douglas N.,Ph.D. > wrote: > > If you're scanner is on this list, then use the given protocol > http://adni.loni.usc.edu/methods/documents/mri-protocols/ > > >> On 3/26/19 1:56 AM, mustafa amin wrote: >> External Email - Use Caution >> >> Dear Douglas, >> >> I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however >> the radiologist and operator of the MRI did not understand with the term. >> Can you explain it further please? We never done it before, here in Medan >> Indonesia. This is the first time we are going to do it. And, do you have >> suggestion for the MRI slice? Coronal, sagittal or else? Thank you in >> advance. >> >> Yours faithfully, >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >>> On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. >>> wrote: >>> >>> I highly recommend the multiecho mprage at about 1mm. >>> On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something cheers Bruce On Thu, 21 Feb 2019, mustafa amin wrote: >External Email - Use Caution > > Dear member, > > I am really new with this freesurfer, just need to ask 1 question. Is > there a special image protocol before running the MRI and then upload it > to freesurfer? Please share your thoughts. Thank you for your kind > attention and cooperation. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution Hi Bruce, I mentioned and showed the MP-RAGE protocol along with 3D acquisition, sagittal and 1 mm isotropic. According to the radiologist and the operator it needs contrast that will be injected to the patient. Is it true? Please confirm and share some thoughts with me. Thank you in advance. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 26 Mar 2019, at 21.24, Bruce Fischl wrote: > > Hi Mustafa > > what type of scanner are you using? A normal mprage should be fine. > Typically we acquire sagittaly as that is the shortest air-to-air > direction. Make sure that the acquisition is 3D and around 1mm isotropic. > We may have a protocol you can use depending on your scanner hardware and > software > cheers > Bruce > > >> On Tue, 26 Mar 2019, mustafa amin wrote: >> >> External Email - Use Caution >> >> Dear Douglas, >> >> I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however >> the radiologist and operator of the MRI did not understand with the term. >> Can you explain it further please? We never done it before, here in Medan >> Indonesia. This is the first time we are going to do it. And, do you have >> suggestion for the MRI slice? Coronal, sagittal or else? Thank you in >> advance. >> >> Yours faithfully, >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >>> On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. >>> wrote: >>> >>> I highly recommend the multiecho mprage at about 1mm. >>> On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something cheers Bruce On Thu, 21 Feb 2019, mustafa amin wrote: > External Email - Use Caution > > Dear member, > > I am really new with this freesurfer, just need to ask 1 question. Is > there a special image protocol before running the MRI and then upload it > to freesurfer? Please share your thoughts. Thank you for your kind > attention and cooperation. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
If you're scanner is on this list, then use the given protocol http://adni.loni.usc.edu/methods/documents/mri-protocols/ On 3/26/19 1:56 AM, mustafa amin wrote: > External Email - Use Caution > > Dear Douglas, > > I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the > radiologist and operator of the MRI did not understand with the term. Can you > explain it further please? We never done it before, here in Medan Indonesia. > This is the first time we are going to do it. And, do you have suggestion for > the MRI slice? Coronal, sagittal or else? Thank you in advance. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > >> On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. >> wrote: >> >> I highly recommend the multiecho mprage at about 1mm. >> >>> On 2/21/19 10:30 AM, Bruce Fischl wrote: >>> Hi Mustafa >>> >>> FreeSurfer should work fine with many image protocols. If you have the >>> freedom to choose one, Andre van der Kouwe (ccd) can point you at the >>> sequence he developed for Siemens. If you are using a different scanner >>> give us the details and we can recommend something >>> >>> cheers >>> Bruce >>> >>> >>> On Thu, 21 Feb >>> 2019, mustafa amin wrote: >>> External Email - Use Caution Dear member, I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
Hi Mustafa what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce On Tue, 26 Mar 2019, mustafa amin wrote: >External Email - Use Caution > > Dear Douglas, > > I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however > the radiologist and operator of the MRI did not understand with the term. > Can you explain it further please? We never done it before, here in Medan > Indonesia. This is the first time we are going to do it. And, do you have > suggestion for the MRI slice? Coronal, sagittal or else? Thank you in > advance. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > >> On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. >> wrote: >> >> I highly recommend the multiecho mprage at about 1mm. >> >>> On 2/21/19 10:30 AM, Bruce Fischl wrote: >>> Hi Mustafa >>> >>> FreeSurfer should work fine with many image protocols. If you have the >>> freedom to choose one, Andre van der Kouwe (ccd) can point you at the >>> sequence he developed for Siemens. If you are using a different scanner >>> give us the details and we can recommend something >>> >>> cheers >>> Bruce >>> >>> >>> On Thu, 21 Feb >>> 2019, mustafa amin wrote: >>> External Email - Use Caution Dear member, I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution Dear Douglas, I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. > wrote: > > I highly recommend the multiecho mprage at about 1mm. > >> On 2/21/19 10:30 AM, Bruce Fischl wrote: >> Hi Mustafa >> >> FreeSurfer should work fine with many image protocols. If you have the >> freedom to choose one, Andre van der Kouwe (ccd) can point you at the >> sequence he developed for Siemens. If you are using a different scanner >> give us the details and we can recommend something >> >> cheers >> Bruce >> >> >> On Thu, 21 Feb >> 2019, mustafa amin wrote: >> >>>External Email - Use Caution >>> >>> Dear member, >>> >>> I am really new with this freesurfer, just need to ask 1 question. Is there >>> a special image protocol before running the MRI and then upload it to >>> freesurfer? Please share your thoughts. Thank you for your kind attention >>> and cooperation. >>> >>> Yours faithfully, >>> >>> Mustafa M. Amin >>> Consultant Psychiatrist in Biological Psychiatry >>> Department of Psychiatry >>> Faculty of Medicine >>> Universitas Sumatera Utara >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution Hi Bruce, The MRI machine is from Phillips with 1.5 Tesla. How about the slice? Do I need to prepare sagittal, coronal or else? Thank you in advance. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 21 Feb 2019, at 22.30, Bruce Fischl wrote: > > Hi Mustafa > > FreeSurfer should work fine with many image protocols. If you have the > freedom to choose one, Andre van der Kouwe (ccd) can point you at the > sequence he developed for Siemens. If you are using a different scanner > give us the details and we can recommend something > > cheers > Bruce > > > On Thu, 21 Feb > 2019, mustafa amin wrote: > >> External Email - Use Caution >> >> Dear member, >> >> I am really new with this freesurfer, just need to ask 1 question. Is there >> a special image protocol before running the MRI and then upload it to >> freesurfer? Please share your thoughts. Thank you for your kind attention >> and cooperation. >> >> Yours faithfully, >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution Thank you for the information Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. > wrote: > > I highly recommend the multiecho mprage at about 1mm. > >> On 2/21/19 10:30 AM, Bruce Fischl wrote: >> Hi Mustafa >> >> FreeSurfer should work fine with many image protocols. If you have the >> freedom to choose one, Andre van der Kouwe (ccd) can point you at the >> sequence he developed for Siemens. If you are using a different scanner >> give us the details and we can recommend something >> >> cheers >> Bruce >> >> >> On Thu, 21 Feb >> 2019, mustafa amin wrote: >> >>>External Email - Use Caution >>> >>> Dear member, >>> >>> I am really new with this freesurfer, just need to ask 1 question. Is there >>> a special image protocol before running the MRI and then upload it to >>> freesurfer? Please share your thoughts. Thank you for your kind attention >>> and cooperation. >>> >>> Yours faithfully, >>> >>> Mustafa M. Amin >>> Consultant Psychiatrist in Biological Psychiatry >>> Department of Psychiatry >>> Faculty of Medicine >>> Universitas Sumatera Utara >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
External Email - Use Caution Hi Bruce Thank you for letting me know about this, I’ll contact Andre if I need further explanation. Cheers Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara > On 21 Feb 2019, at 22.30, Bruce Fischl wrote: > > Hi Mustafa > > FreeSurfer should work fine with many image protocols. If you have the > freedom to choose one, Andre van der Kouwe (ccd) can point you at the > sequence he developed for Siemens. If you are using a different scanner > give us the details and we can recommend something > > cheers > Bruce > > > On Thu, 21 Feb > 2019, mustafa amin wrote: > >> External Email - Use Caution >> >> Dear member, >> >> I am really new with this freesurfer, just need to ask 1 question. Is there >> a special image protocol before running the MRI and then upload it to >> freesurfer? Please share your thoughts. Thank you for your kind attention >> and cooperation. >> >> Yours faithfully, >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
I highly recommend the multiecho mprage at about 1mm. On 2/21/19 10:30 AM, Bruce Fischl wrote: > Hi Mustafa > > FreeSurfer should work fine with many image protocols. If you have the > freedom to choose one, Andre van der Kouwe (ccd) can point you at the > sequence he developed for Siemens. If you are using a different scanner > give us the details and we can recommend something > > cheers > Bruce > > > On Thu, 21 Feb > 2019, mustafa amin wrote: > >> External Email - Use Caution >> >> Dear member, >> >> I am really new with this freesurfer, just need to ask 1 question. Is there >> a special image protocol before running the MRI and then upload it to >> freesurfer? Please share your thoughts. Thank you for your kind attention >> and cooperation. >> >> Yours faithfully, >> >> Mustafa M. Amin >> Consultant Psychiatrist in Biological Psychiatry >> Department of Psychiatry >> Faculty of Medicine >> Universitas Sumatera Utara >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Special image protocol
Hi Mustafa FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something cheers Bruce On Thu, 21 Feb 2019, mustafa amin wrote: >External Email - Use Caution > > Dear member, > > I am really new with this freesurfer, just need to ask 1 question. Is there a > special image protocol before running the MRI and then upload it to > freesurfer? Please share your thoughts. Thank you for your kind attention and > cooperation. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Special image protocol
External Email - Use Caution Dear member, I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation. Yours faithfully, Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
