[Freesurfer] TRACULA tract group comparison p-values
Dear Freesurfers, I am looking for a way to add a colorbar to my p-value tract cores generated through TRACULA. When I load up the images as described in the tutorial here https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics I only get a colorbar from 0 to 28.5 which cannot reflect pvalues, and there is no option to select my textfile with the p-values unfortunately. Would you please help? Thanks ever so, Barbara ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] TRACULA tract group comparison p-values
Hi Barbara - I don't believe that freeview has an option to show colorbars for heat maps that are loaded onto waypoints (if that's what you're trying to display). We should definitely add it in the future. Best, a.y On Wed, 6 Jul 2016, Barbara Kreilkamp wrote: > Dear Freesurfers, > > I am looking for a way to add a colorbar to my p-value tract cores > generated through TRACULA. > > When I load up the images as described in the tutorial here > https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics > > I only get a colorbar from 0 to 28.5 which cannot reflect pvalues, and > there is no option to select my textfile with the p-values unfortunately. > > Would you please help? > > Thanks ever so, > > Barbara > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] TRACULA tract group comparison p-values
Dear Anastasia, Thank you, yes that was exactly what I was attempting to do. Would you be able to assist me with this following question as well please? How would I be able to use a different colormap under point sets please? I can only find "solid color" and "heatmap" but for example a blue-yellow-to-red colormap would suit my needs more. Thank you, Best wishes, Barbara On 07/07/2016 13:52, Anastasia Yendiki wrote: > Hi Barbara - I don't believe that freeview has an option to show colorbars > for heat maps that are loaded onto waypoints (if that's what you're > trying to display). We should definitely add it in the future. > > Best, > a.y > > On Wed, 6 Jul 2016, Barbara Kreilkamp wrote: > >> Dear Freesurfers, >> >> I am looking for a way to add a colorbar to my p-value tract cores >> generated through TRACULA. >> >> When I load up the images as described in the tutorial here >> https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics >> >> I only get a colorbar from 0 to 28.5 which cannot reflect pvalues, and >> there is no option to select my textfile with the p-values unfortunately. >> >> Would you please help? >> >> Thanks ever so, >> >> Barbara >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] TRACULA tract group comparison p-values
Hi Barbara - Unfortunately we are very limited right now in our options for point set overlay display. I guess there's nothing that would be more suitable for displaying values that go all the way from negative to positive (which is what I suspect you have). I'll submit this request to freeview headquarters :) Hopefully we can get it in there quickly. Thanks for your patience! a.y On Sun, 10 Jul 2016, Barbara Kreilkamp wrote: > Dear Anastasia, > > Thank you, yes that was exactly what I was attempting to do. Would you > be able to assist me with this following question as well please? > > How would I be able to use a different colormap under point sets please? > I can only find "solid color" and "heatmap" but for example a > blue-yellow-to-red colormap would suit my needs more. > > Thank you, > > Best wishes, > > Barbara > > > On 07/07/2016 13:52, Anastasia Yendiki wrote: >> Hi Barbara - I don't believe that freeview has an option to show colorbars >> for heat maps that are loaded onto waypoints (if that's what you're >> trying to display). We should definitely add it in the future. >> >> Best, >> a.y >> >> On Wed, 6 Jul 2016, Barbara Kreilkamp wrote: >> >>> Dear Freesurfers, >>> >>> I am looking for a way to add a colorbar to my p-value tract cores >>> generated through TRACULA. >>> >>> When I load up the images as described in the tutorial here >>> https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics >>> >>> I only get a colorbar from 0 to 28.5 which cannot reflect pvalues, and >>> there is no option to select my textfile with the p-values unfortunately. >>> >>> Would you please help? >>> >>> Thanks ever so, >>> >>> Barbara >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] TRACULA tract group comparison p-values
That's great, thank you Anastasia! Best wishes, Barbara On 12/07/2016 22:52, Anastasia Yendiki wrote: > Hi Barbara - Unfortunately we are very limited right now in our options > for point set overlay display. I guess there's nothing that would be more > suitable for displaying values that go all the way from negative to > positive (which is what I suspect you have). > > I'll submit this request to freeview headquarters :) Hopefully we can get > it in there quickly. Thanks for your patience! > > a.y > > On Sun, 10 Jul 2016, Barbara Kreilkamp wrote: > >> Dear Anastasia, >> >> Thank you, yes that was exactly what I was attempting to do. Would you >> be able to assist me with this following question as well please? >> >> How would I be able to use a different colormap under point sets please? >> I can only find "solid color" and "heatmap" but for example a >> blue-yellow-to-red colormap would suit my needs more. >> >> Thank you, >> >> Best wishes, >> >> Barbara >> >> >> On 07/07/2016 13:52, Anastasia Yendiki wrote: >>> Hi Barbara - I don't believe that freeview has an option to show colorbars >>> for heat maps that are loaded onto waypoints (if that's what you're >>> trying to display). We should definitely add it in the future. >>> >>> Best, >>> a.y >>> >>> On Wed, 6 Jul 2016, Barbara Kreilkamp wrote: >>> Dear Freesurfers, I am looking for a way to add a colorbar to my p-value tract cores generated through TRACULA. When I load up the images as described in the tutorial here https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TraculaStatistics I only get a colorbar from 0 to 28.5 which cannot reflect pvalues, and there is no option to select my textfile with the p-values unfortunately. Would you please help? Thanks ever so, Barbara ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
