It appears to be an issue with the dev build and should be fixed in
tomorrows build.
-Zeke
On 03/02/2016 08:31 AM, Watson, Christopher wrote:
> The option should be:
> --annot aparc.DKTatlas40
>
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of marmaduke woodman
> [marmaduke.wood...@univ-amu.fr]
> Sent: Wednesday, March 2, 2016 08:27
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: [Freesurfer] Unknown option DKTatlas40
>
> hi
>
> I'm using the dev version of FreeSurfer on 64-bit Fedora 23.
>
>
> Recon-all runs fine but at the end I see
>
> $ recon-all -s tvb -aparc2aseg
> ...
>mri_aparc2aseg --s tvb --volmask --aseg aseg.presurf.hypos --DKTatlas40
>
> ERROR: Option --DKTatlas40 unknown
>
>
> Running that command
>
> $ mri_aparc2aseg --s tvb --volmask --aseg aseg.presurf.hypos
>
> without the --DKTatlas40 appears to run correctly.
>
>
> Is this just an issue with the dev version or have I done something silly?
>
>
> thanks,
> Marmaduke
>
>
> ps bugr output
>
> FREESURFER_HOME: /opt/freesurfer
>
> Build stamp: freesurfer-Linux-centos6_x86_64-dev-20160229
>
> RedHat release: Fedora release 23 (Twenty Three)
>
> Kernel info: Linux 4.3.3-300.fc23.x86_64 x86_64
>
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>
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