[Freesurfer] analysis.cfg not generated by mkanalysis-sess
Dear all, I ran mkanalysis-sess (mkanalysis-sess -analysis junk -TR 2 -paradigm para01.para -event-related -funcstem fmc -nconditions 3 -runlistfile runlist_odd -fsd bold -fir 10 30 -native) but it did't not generate analysis.cfg. The only file I can see after running this is analysis.info. When I ran mkanalysis-sess.new, both analysis-info and analysis.cfg are generated as fine. Could any one know how to solve this problem? ps. I'm running freesurfer5.1.0 on Mac OS X 10.6.8 (the mkanalysis-sess.new is a copy from freesurfer4.5.0). Thanks! Brown ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] analysis.cfg not generated by mkanalysis-sess
The 5.X version does not produce a cfg anymore, so everything is ok. You cannot use older versions of mkanalysis-sess with 5.X doug Po-Jang (Brown) Hsieh wrote: Dear all, I ran mkanalysis-sess (mkanalysis-sess -analysis junk -TR 2 -paradigm para01.para -event-related -funcstem fmc -nconditions 3 -runlistfile runlist_odd -fsd bold -fir 10 30 -native) but it did't not generate analysis.cfg. The only file I can see after running this is analysis.info http://analysis.info/. When I ran mkanalysis-sess.new, both analysis-info and analysis.cfg are generated as fine. Could any one know how to solve this problem? ps. I'm running freesurfer5.1.0 on Mac OS X 10.6.8 (the mkanalysis-sess.new is a copy from freesurfer4.5.0). Thanks! Brown ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] analysis.cfg not generated by mkanalysis-sess
Dear Doug, Thanks very much! But without analysis.cfg, I cannot run selxave-sess... Am I missing something here? Brown On Wed, Sep 28, 2011 at 11:36 PM, Douglas N Greve gr...@nmr.mgh.harvard.edu wrote: The 5.X version does not produce a cfg anymore, so everything is ok. You cannot use older versions of mkanalysis-sess with 5.X doug Po-Jang (Brown) Hsieh wrote: Dear all, I ran mkanalysis-sess (mkanalysis-sess -analysis junk -TR 2 -paradigm para01.para -event-related -funcstem fmc -nconditions 3 -runlistfile runlist_odd -fsd bold -fir 10 30 -native) but it did't not generate analysis.cfg. The only file I can see after running this is analysis.info http://analysis.info/. When I ran mkanalysis-sess.new, both analysis-info and analysis.cfg are generated as fine. Could any one know how to solve this problem? ps. I'm running freesurfer5.1.0 on Mac OS X 10.6.8 (the mkanalysis-sess.new is a copy from freesurfer4.5.0). Thanks! Brown --**--** __**_ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurferhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/**fswiki/BugReportinghttp://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/**facility/filedrop/index.htmlhttp://www.nmr.mgh.harvard.edu/facility/filedrop/index.html The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Po-Jang (Brown) Hsieh Neuroscience and Behavioral Disorders Program Duke-NUS Graduate Medical School 8 College Road, Singapore 169857 -- Lab website: Brain Consciousness Labhttps://sites.google.com/site/brainconsciousnesslab/ http://brownhsieh.blogspot.com/ ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] analysis.cfg not generated by mkanalysis-sess
Hi Brown, you should not be mixing versions. There is no selxavg-sess in 5.X. The new version is selxavg3-sess. doug Po-Jang (Brown) Hsieh wrote: Dear Doug, Thanks very much! But without analysis.cfg, I cannot run selxave-sess... Am I missing something here? Brown On Wed, Sep 28, 2011 at 11:36 PM, Douglas N Greve gr...@nmr.mgh.harvard.edu mailto:gr...@nmr.mgh.harvard.edu wrote: The 5.X version does not produce a cfg anymore, so everything is ok. You cannot use older versions of mkanalysis-sess with 5.X doug Po-Jang (Brown) Hsieh wrote: Dear all, I ran mkanalysis-sess (mkanalysis-sess -analysis junk -TR 2 -paradigm para01.para -event-related -funcstem fmc -nconditions 3 -runlistfile runlist_odd -fsd bold -fir 10 30 -native) but it did't not generate analysis.cfg. The only file I can see after running this is analysis.info http://analysis.info http://analysis.info/. When I ran mkanalysis-sess.new, both analysis-info and analysis.cfg are generated as fine. Could any one know how to solve this problem? ps. I'm running freesurfer5.1.0 on Mac OS X 10.6.8 (the mkanalysis-sess.new is a copy from freesurfer4.5.0). Thanks! Brown ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu mailto:gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Po-Jang (Brown) Hsieh Neuroscience and Behavioral Disorders Program Duke-NUS Graduate Medical School 8 College Road, Singapore 169857 -- Lab website: Brain Consciousness Lab https://sites.google.com/site/brainconsciousnesslab/ -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
