Hi Cathy, try removing --parc --aparc or changing it to --parc
aparc. Let me know if that works.
doug
On 01/18/2013 09:26 AM, Catherine Bois wrote:
Hi, I am trying to extract stats files from my subjects using this command
aparcstats2table --hemi lh --subjects EHRS_* --skip --meas thickness
--parc --aparc --tablefile lh.thick.table
however I keep getting this error message
Parsing the .stats files
Skipping
/sdata/images/projects/EHRS/2/Freesurfer_EHRS/READYFORANALYSIS/EHRS_0970_3/stats/lh.--aparc.stats
Building the table..
Traceback (most recent call last):
File /usr/local2/freesurfer/bin/aparcstats2table, line 338, in ?
rows, columns, table = sanitize_table(options, pretable)
File /usr/local2/freesurfer/bin/aparcstats2table, line 253, in
sanitize_table
_spec, _parc_measure_map = dt[0]
IndexError: list index out of range
[cbois@poplar ~]$
I have previously used this command on version 5, I now have version
5.1, have the commands possibly changed?
Thanks,
Cathy
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
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