[Freesurfer] configure overlay display in tksurfer by keyboard inputs
Hi all, I have installed FS 5.3 on an Ubuntu 14.04 system and find that I am unable to set threshold values in the edit boxes in the "configure overlay" display in tksurfer. Does anybody know how to fix this (without specifying the threshold on the command line each time)? Thank you! yours, Lars M. Rimol, PhD Department of Medicine John A. Burns School of Medicine University of Hawai'i 1356 Lusitana Street, University Tower Honolulu, HI 96813 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] configure overlay display in tksurfer by keyboard inputs
Hi Lars can you give more details? What prevents you from entering values? Do you get any errors when tksurfer loads? cheers Bruce On Sat, 15 Aug 2015, Lars M. Rimol wrote: > > Hi all, > > I have installed FS 5.3 on an Ubuntu 14.04 system and find that I am unable > to set threshold > values in the edit boxes in the "configure overlay" display in tksurfer. Does > anybody know > how to fix this (without specifying the threshold on the command line each > time)? > > Thank you! > > > > > > yours, > Lars M. Rimol, PhD > Department of Medicine > John A. Burns School of Medicine > University of Hawai'i > 1356 Lusitana Street, University Tower > Honolulu, HI 96813 > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] configure overlay display in tksurfer by keyboard inputs
Hi, I have the same problem with tksurfer in Ubuntu. The keyboard entry doesn't work for the tksurfer input boxes - I can't set any values in the overlay configuration window, edit label info, configure phase encoded data display etc. All of the text / numeric entry boxes have this issue. Any suggestions on how to fix this? My freesurfer verion is freesurfer-Linux-centos6_x86_64-stable-v6-beta-20151015 but I had the same problem before updating to v6-beta. Thanks, David -Message d'origine- De : freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] De la part de Bruce Fischl Envoyé : 15 August 2015 21:12 À : Freesurfer support list Objet : Re: [Freesurfer] configure overlay display in tksurfer by keyboard inputs Hi Lars can you give more details? What prevents you from entering values? Do you get any errors when tksurfer loads? cheers Bruce On Sat, 15 Aug 2015, Lars M. Rimol wrote: > > Hi all, > > I have installed FS 5.3 on an Ubuntu 14.04 system and find that I am > unable to set threshold values in the edit boxes in the "configure > overlay" display in tksurfer. Does anybody know how to fix this (without > specifying the threshold on the command line each time)? > > Thank you! > > > > > > yours, > Lars M. Rimol, PhD > Department of Medicine > John A. Burns School of Medicine > University of Hawai'i > 1356 Lusitana Street, University Tower Honolulu, HI 96813 > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] configure overlay display in tksurfer by keyboard inputs
Hi David tksurfer has been deprecated - can you try using freeview instead? Bruce On Sat, 12 Dec 2015, Slater David wrote: Hi, I have the same problem with tksurfer in Ubuntu. The keyboard entry doesn't work for the tksurfer input boxes - I can't set any values in the overlay configuration window, edit label info, configure phase encoded data display etc. All of the text / numeric entry boxes have this issue. Any suggestions on how to fix this? My freesurfer verion is freesurfer-Linux-centos6_x86_64-stable-v6-beta-20151015 but I had the same problem before updating to v6-beta. Thanks, David -Message d'origine- De : freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] De la part de Bruce Fischl Envoyé : 15 August 2015 21:12 À : Freesurfer support list Objet : Re: [Freesurfer] configure overlay display in tksurfer by keyboard inputs Hi Lars can you give more details? What prevents you from entering values? Do you get any errors when tksurfer loads? cheers Bruce On Sat, 15 Aug 2015, Lars M. Rimol wrote: Hi all, I have installed FS 5.3 on an Ubuntu 14.04 system and find that I am unable to set threshold values in the edit boxes in the "configure overlay" display in tksurfer. Does anybody know how to fix this (without specifying the threshold on the command line each time)? Thank you! yours, Lars M. Rimol, PhD Department of Medicine John A. Burns School of Medicine University of Hawai'i 1356 Lusitana Street, University Tower Honolulu, HI 96813 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] configure overlay display in tksurfer by keyboard inputs
I use freeview a lot and have never had any problems with it. However I want to work on occipital patches to do retinotopy. Can freeview load flat patches? Is there a way to display complex data overlays to produce phase maps as was possible in tksurfer? Thanks, David -Message d'origine- De : freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] De la part de Bruce Fischl Envoyé : 12 December 2015 16:45 À : Freesurfer support list Objet : Re: [Freesurfer] configure overlay display in tksurfer by keyboard inputs Hi David tksurfer has been deprecated - can you try using freeview instead? Bruce On Sat, 12 Dec 2015, Slater David wrote: > Hi, > > I have the same problem with tksurfer in Ubuntu. > > The keyboard entry doesn't work for the tksurfer input boxes - I can't set > any values in the overlay configuration window, edit label info, configure > phase encoded data display etc. All of the text / numeric entry boxes have > this issue. > > Any suggestions on how to fix this? > > My freesurfer verion is > freesurfer-Linux-centos6_x86_64-stable-v6-beta-20151015 but I had the same > problem before updating to v6-beta. > > Thanks, > David > > > -Message d'origine- > De : freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] De la part de Bruce > Fischl Envoyé : 15 August 2015 21:12 À : Freesurfer support list Objet > : Re: [Freesurfer] configure overlay display in tksurfer by keyboard > inputs > > Hi Lars > > can you give more details? What prevents you from entering values? Do you get > any errors when tksurfer loads? > > cheers > Bruce > > On Sat, > 15 Aug 2015, Lars M. Rimol wrote: > >> >> Hi all, >> >> I have installed FS 5.3 on an Ubuntu 14.04 system and find that I am >> unable to set threshold values in the edit boxes in the "configure >> overlay" display in tksurfer. Does anybody know how to fix this (without >> specifying the threshold on the command line each time)? >> >> Thank you! >> >> >> >> >> >> yours, >> Lars M. Rimol, PhD >> Department of Medicine >> John A. Burns School of Medicine >> University of Hawai'i >> 1356 Lusitana Street, University Tower Honolulu, HI 96813 >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom > it is addressed. If you believe this e-mail was sent to you in error > and the e-mail contains patient information, please contact the > Partners Compliance HelpLine at http://www.partners.org/complianceline > . If the e-mail was sent to you in error but does not contain patient > information, please contact the sender and properly dispose of the e-mail. > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] configure overlay display in tksurfer by keyboard inputs
Hi David, Freeview can’t load flat patches now. We will add it to the list of pending features for the future update. Best, Ruopeng > On Dec 12, 2015, at 11:07 AM, Slater David wrote: > > I use freeview a lot and have never had any problems with it. However I want > to work on occipital patches to do retinotopy. > > Can freeview load flat patches? Is there a way to display complex data > overlays to produce phase maps as was possible in tksurfer? > > Thanks, > David > > > -Message d'origine- > De : freesurfer-boun...@nmr.mgh.harvard.edu > [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] De la part de Bruce Fischl > Envoyé : 12 December 2015 16:45 > À : Freesurfer support list > Objet : Re: [Freesurfer] configure overlay display in tksurfer by keyboard > inputs > > Hi David > > tksurfer has been deprecated - can you try using freeview instead? > Bruce > On Sat, > 12 Dec 2015, Slater David wrote: > >> Hi, >> >> I have the same problem with tksurfer in Ubuntu. >> >> The keyboard entry doesn't work for the tksurfer input boxes - I can't set >> any values in the overlay configuration window, edit label info, configure >> phase encoded data display etc. All of the text / numeric entry boxes have >> this issue. >> >> Any suggestions on how to fix this? >> >> My freesurfer verion is >> freesurfer-Linux-centos6_x86_64-stable-v6-beta-20151015 but I had the same >> problem before updating to v6-beta. >> >> Thanks, >> David >> >> >> -Message d'origine----- >> De : freesurfer-boun...@nmr.mgh.harvard.edu >> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] De la part de Bruce >> Fischl Envoyé : 15 August 2015 21:12 À : Freesurfer support list Objet >> : Re: [Freesurfer] configure overlay display in tksurfer by keyboard >> inputs >> >> Hi Lars >> >> can you give more details? What prevents you from entering values? Do you >> get any errors when tksurfer loads? >> >> cheers >> Bruce >> >> On Sat, >> 15 Aug 2015, Lars M. Rimol wrote: >> >>> >>> Hi all, >>> >>> I have installed FS 5.3 on an Ubuntu 14.04 system and find that I am >>> unable to set threshold values in the edit boxes in the "configure >>> overlay" display in tksurfer. Does anybody know how to fix this (without >>> specifying the threshold on the command line each time)? >>> >>> Thank you! >>> >>> >>> >>> >>> >>> yours, >>> Lars M. Rimol, PhD >>> Department of Medicine >>> John A. Burns School of Medicine >>> University of Hawai'i >>> 1356 Lusitana Street, University Tower Honolulu, HI 96813 >>> >>> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom >> it is addressed. If you believe this e-mail was sent to you in error >> and the e-mail contains patient information, please contact the >> Partners Compliance HelpLine at http://www.partners.org/complianceline >> . If the e-mail was sent to you in error but does not contain patient >> information, please contact the sender and properly dispose of the e-mail. >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
