Re: [Freesurfer] contrast between two independent CTh maps?
Ah I see. Okay, will give this a try. Thank you Doug! Best regards, Fred > On Mar 22, 2017, at 17:04, Douglas Greve wrote: > > when you ran mri_glmfit, you had to give it an input (eg, --y > group1.mgh) with all the subjects from group 1. You would have a similar > file for group2. You would then combine them into one file, eg > > mri_concat group1.mgh group2.mgh --o group1-and2.mgh > > you would then create a new FSGD file for both groups, then run > mri_glmfit --y goup1-and2.mgh ... > > >> On 3/22/17 4:55 PM, Uquillas, Federico D'Oleire wrote: >> Hi Doug, >> What do you mean by combining all the data (and how would you suggest we go >> about this?)? >> And also how does one do a two-group test? >> >> Thank you! >> >> Best, >> >> Fred >> >>> On Mar 22, 2017, at 16:51, Uquillas, Federico D'Oleire >>> wrote: >>> >>> Dear FreeSurfer experts, >>> >>> I’ve been trying to find a way to get a map of the difference between two >>> independent CTh association maps but can’t seem to find a solution. >>> >>> I have two maps of independent groups (one is N=15, the other N=20) I would >>> like to compare. Is there maybe a way to do a sig1.mgh – sig2.mgh and then >>> visualize this? Not sure how to go about it. I’m basically trying to >>> visualize what is left over after subtracting one map from the other >>> (independent samples t-test of sorts). >>> >>> Thank you so much for any help you may be able to provide! >>> >>> Best regards, >>> >>> Fred >>> >>> >>> ___ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] contrast between two independent CTh maps?
Hi Doug, What do you mean by combining all the data (and how would you suggest we go about this?)? And also how does one do a two-group test? Thank you! Best, Fred > On Mar 22, 2017, at 16:51, Uquillas, Federico D'Oleire > wrote: > > Dear FreeSurfer experts, > > I’ve been trying to find a way to get a map of the difference between two > independent CTh association maps but can’t seem to find a solution. > > I have two maps of independent groups (one is N=15, the other N=20) I would > like to compare. Is there maybe a way to do a sig1.mgh – sig2.mgh and then > visualize this? Not sure how to go about it. I’m basically trying to > visualize what is left over after subtracting one map from the other > (independent samples t-test of sorts). > > Thank you so much for any help you may be able to provide! > > Best regards, > > Fred > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] contrast between two independent CTh maps?
when you ran mri_glmfit, you had to give it an input (eg, --y group1.mgh) with all the subjects from group 1. You would have a similar file for group2. You would then combine them into one file, eg mri_concat group1.mgh group2.mgh --o group1-and2.mgh you would then create a new FSGD file for both groups, then run mri_glmfit --y goup1-and2.mgh ... On 3/22/17 4:55 PM, Uquillas, Federico D'Oleire wrote: > Hi Doug, > What do you mean by combining all the data (and how would you suggest we go > about this?)? > And also how does one do a two-group test? > > Thank you! > > Best, > > Fred > >> On Mar 22, 2017, at 16:51, Uquillas, Federico D'Oleire >> wrote: >> >> Dear FreeSurfer experts, >> >> I’ve been trying to find a way to get a map of the difference between two >> independent CTh association maps but can’t seem to find a solution. >> >> I have two maps of independent groups (one is N=15, the other N=20) I would >> like to compare. Is there maybe a way to do a sig1.mgh – sig2.mgh and then >> visualize this? Not sure how to go about it. I’m basically trying to >> visualize what is left over after subtracting one map from the other >> (independent samples t-test of sorts). >> >> Thank you so much for any help you may be able to provide! >> >> Best regards, >> >> Fred >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] contrast between two independent CTh maps?
the easiest thing to do is to combine all the data together and do a two group test On 3/22/17 4:49 PM, Uquillas, Federico D'Oleire wrote: Dear FreeSurfer experts, I’ve been trying to find a way to get a map of the difference between two independent CTh association maps but can’t seem to find a solution. I have two maps of independent groups (one is N=15, the other N=20) I would like to compare. Is there maybe a way to do a sig1.mgh – sig2.mgh and then visualize this? Not sure how to go about it. I’m basically trying to visualize what is left over after subtracting one map from the other (independent samples t-test of sorts). Thank you so much for any help you may be able to provide! Best regards, Fred ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] contrast between two independent CTh maps?
Dear FreeSurfer experts, I’ve been trying to find a way to get a map of the difference between two independent CTh association maps but can’t seem to find a solution. I have two maps of independent groups (one is N=15, the other N=20) I would like to compare. Is there maybe a way to do a sig1.mgh – sig2.mgh and then visualize this? Not sure how to go about it. I’m basically trying to visualize what is left over after subtracting one map from the other (independent samples t-test of sorts). Thank you so much for any help you may be able to provide! Best regards, Fred ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
