Re: [Freesurfer] creating new curv/thick/area files using tweaked white/pial

2013-04-15 Thread Bruce Fischl
Hi Fred

mris_thickness will make thickness. Not sure we have anything to make 
area. I guess you could try setting -n 0 in mris_make_surfaces to it runs 
for 0 iterations. Or we can put something together to create area - it 
should be trivial

cheers
Bruce
On Mon, 15 Apr 2013, Fred Dick wrote:

 Hi there

 [Doug/Bruce, sorry for storm of enquiries!]

 V quick question:  I've fixed up some small defects in white and pial surfs 
 (using reposition), and need to regenerate area/thickness/curv etc without 
 changing them. Is there a straightforward way to do this with 
 mris_make_surfaces, or should one use mris_thickness and mris_curvature? (Not 
 sure which binary makes area).

 Is there a straightforward way to use mris_make_surfaces to create these 
 without altering the pial  white? (Maybe with  --white NOWRITE --pial 
 NOWRITE?)

 cheers,
 Fred


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Re: [Freesurfer] creating new curv/thick/area files using tweaked white/pial

2013-04-15 Thread Fred Dick
Hey, thanks Bruce. I will let you know what happens with -n 0. Area not a big 
deal for this. 

cheers,
Fred
On 15 Apr 2013, at 14:32, Bruce Fischl fis...@nmr.mgh.harvard.edu wrote:

 Hi Fred
 
 mris_thickness will make thickness. Not sure we have anything to make area. I 
 guess you could try setting -n 0 in mris_make_surfaces to it runs for 0 
 iterations. Or we can put something together to create area - it should be 
 trivial
 
 cheers
 Bruce
 On Mon, 15 Apr 2013, Fred Dick wrote:
 
 Hi there
 
 [Doug/Bruce, sorry for storm of enquiries!]
 
 V quick question:  I've fixed up some small defects in white and pial surfs 
 (using reposition), and need to regenerate area/thickness/curv etc without 
 changing them. Is there a straightforward way to do this with 
 mris_make_surfaces, or should one use mris_thickness and mris_curvature? 
 (Not sure which binary makes area).
 
 Is there a straightforward way to use mris_make_surfaces to create these 
 without altering the pial  white? (Maybe with  --white NOWRITE --pial 
 NOWRITE?)
 
 cheers,
 Fred
 
 
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 Freesurfer@nmr.mgh.harvard.edu
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 The information in this e-mail is intended only for the person to whom it is
 addressed. If you believe this e-mail was sent to you in error and the e-mail
 contains patient information, please contact the Partners Compliance HelpLine 
 at
 http://www.partners.org/complianceline . If the e-mail was sent to you in 
 error
 but does not contain patient information, please contact the sender and 
 properly
 dispose of the e-mail.
 


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