Re: [Freesurfer] error mni152 reg

2015-05-27 Thread Douglas N Greve

download this version
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mni152reg
and copy it to $FREESURFER_HOME/bin

doug


On 05/26/2015 01:40 PM, Park, Jung Mi wrote:
> Hello Freesurfer
>
> *mni152reg --s 0201JB-anat*
> *=> *mkdir: cannot create directory
>
> `/usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.31253': 
> Permission denied.
>
> Thus I put this command following the way of searching freesurfer mail 
> support.
>
> chmod 
> ugo+w /usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.31253
> chmod: cannot access 
> `/usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.31253': 
> No such file or directory
>
> I am using freesurver 5.3 and FDL 5. 0.7.
> Please let me know what should I do.
>
> Thank you.
>
>
> Linux gencess 2.6.32-504.1.3.el6.x86_64 #1 SMP Tue Nov 11 17:57:25 UTC 
> 2014 x86_64 x86_64 x86_64 GNU/Linux fslregister --mov 
> /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_2mm_brain.nii.gz 
> --s 0201JB-anat --reg 
> /autofs/cluster/catanagp/users/jumi/subjects/AD/0201JB/0201JB-anat/mri/transforms/reg.mni152.2mm.dat
>  
> --dof 12
> mkdir: cannot create directory
> `/usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.31253': 
> Permission denied
>
>
>
>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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[Freesurfer] error mni152 reg

2015-05-26 Thread Park, Jung Mi
Hello Freesurfer

mni152reg --s 0201JB-anat
=> mkdir: cannot create directory

`/usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.31253': 
Permission denied.

Thus I put this command following the way of searching freesurfer mail support.

chmod ugo+w /usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.31253
chmod: cannot access 
`/usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.31253': No such 
file or directory

I am using freesurver 5.3 and FDL 5. 0.7.
Please let me know what should I do.

Thank you.


Linux gencess 2.6.32-504.1.3.el6.x86_64 #1 SMP Tue Nov 11 17:57:25 UTC 2014 
x86_64 x86_64 x86_64 GNU/Linux fslregister --mov 
/usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_2mm_brain.nii.gz --s 
0201JB-anat --reg 
/autofs/cluster/catanagp/users/jumi/subjects/AD/0201JB/0201JB-anat/mri/transforms/reg.mni152.2mm.dat
 --dof 12
mkdir: cannot create directory
`/usr/pubsw/packages/fsl/current/data/standard/tmp.fslregister.31253': 
Permission denied





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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.