Re: [Freesurfer] freeview showing results in a strange manner
When you open it in freeview, you have to specify a surface (eg,
fsaverage/surf/lh.white) and then load that file as an overlay to that
surface
On 11/21/2018 05:11 PM, 姜时泽 wrote:
>
> External Email - Use Caution
>
> Dear freesurfer experts,
> I am using freesurfer to analyze my PET data according to the tutorial
> online. It works pretty well and I write the values of the results of
> each region to the template with Matlab (file attached here entitled
> "lh.subj1.mgz"). However, when I try to open it with freeview, the
> image looks quite strange ('Picture_1') but it works with tksurfer
> (Picture_2). Does any one know what is wrong with this? Did I plot the
> result in a wrong way?
>
> Thanks very much
> Shize
>
>
>
>
>
> --
>
> Shize Jiang
> Fudan University,
> Department of neurosurgery, Huashan Hospital, Shanghai Medical College
> Shanghai,200032,P.R.China
> Mobile: (86)18317079839
> E-Mail: sjian...@fudan.edu.cn
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
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Re: [Freesurfer] freeview showing results in a strange manner
Hi Shize
is lh.subj1.mgz a surface overlay? If so you display it as:
freeview -f lh.inflated:overlay=lh.subj1.mgz
cheers
Bruce
On Thu, 22 Nov
2018, 姜时泽 wrote:
External Email - Use Caution
Hi Ruopeng,
my freeview command for this result is 'freeview -v lh.subj1.mgz'.
I tried 'freeview -f lh.subj1.mgz' also, the message with in terminal said
'freadFloat: fread
failed'
Thank you
Shize
At 2018-11-22 06:38:29, "Ruopeng Wang" wrote:
What is your freeview command? Is there any message shown in the terminal?
Ruopeng
On Nov 21, 2018, at 5:07 PM, 姜时泽 wrote:
Dear freesurfer experts,
I am using freesurfer to analyze my PET data according to the tutorial online.
It works
pretty well and I write the values of the results of each region to the
template with
Matlab (file attached here entitled "lh.subj1.mgz"). However, when I try to
open it with
freeview, the image looks quite strange ('Picture_1') but it works with tksurfer
(Picture_2). Does any one know what is wrong with this? Did I plot the result
in a wrong
way?
Thanks very much
Shize
--
Shize Jiang
Fudan University,
Department of neurosurgery, Huashan Hospital, Shanghai Medical College
Shanghai,200032,P.R.China
Mobile: (86)18317079839
E-Mail: sjian...@fudan.edu.cn
[biz2_sj_copyright.gif]
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Re: [Freesurfer] freeview showing results in a strange manner
External Email - Use Caution
Hi Ruopeng,
my freeview command for this result is 'freeview -v lh.subj1.mgz'.
I tried 'freeview -f lh.subj1.mgz' also, the message with in terminal said
'freadFloat: fread failed'
Thank you
Shize
At 2018-11-22 06:38:29, "Ruopeng Wang" wrote:
What is your freeview command? Is there any message shown in the terminal?
Ruopeng
On Nov 21, 2018, at 5:07 PM, 姜时泽 wrote:
|
|
Dear freesurfer experts,
I am using freesurfer to analyze my PET data according to the tutorial online.
It works pretty well and I write the values of the results of each region to
the template with Matlab (file attached here entitled "lh.subj1.mgz"). However,
when I try to open it with freeview, the image looks quite strange
('Picture_1') but it works with tksurfer (Picture_2). Does any one know what is
wrong with this? Did I plot the result in a wrong way?
Thanks very much
Shize
--
Shize Jiang
Fudan University,
Department of neurosurgery, Huashan Hospital, Shanghai Medical College
Shanghai,200032,P.R.China
Mobile: (86)18317079839
E-Mail: sjian...@fudan.edu.cn
|
|
| |
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Re: [Freesurfer] freeview showing results in a strange manner
What is your freeview command? Is there any message shown in the terminal?
Ruopeng
> On Nov 21, 2018, at 5:07 PM, 姜时泽 wrote:
>
> Dear freesurfer experts,
> I am using freesurfer to analyze my PET data according to the tutorial
> online. It works pretty well and I write the values of the results of each
> region to the template with Matlab (file attached here entitled
> "lh.subj1.mgz"). However, when I try to open it with freeview, the image
> looks quite strange ('Picture_1') but it works with tksurfer (Picture_2).
> Does any one know what is wrong with this? Did I plot the result in a wrong
> way?
>
> Thanks very much
> Shize
>
>
>
>
> --
> Shize Jiang
> Fudan University,
> Department of neurosurgery, Huashan Hospital, Shanghai Medical College
> Shanghai,200032,P.R.China
> Mobile: (86)18317079839
> E-Mail: sjian...@fudan.edu.cn
>
>
>
>
>
>
>
>
>
>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
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