Hi Danielle,
from the mri directory of a subject, run
freeview nu.mgz -p-labels posterior_left_* posterior_Left-Hippocampus.mgz
-p-labels posterior_right_* posterior_Right-Hippocampus.mgz -p-prefix
posterior_ -p-lut $FREESURFER_HOME/FreeSurferColorLUT.txt
and be a bit patient; it takes a little while to combine all the posteriors
into the segmentation.
Cheers,
Eugenio
Juan Eugenio Iglesias
Postdoctoral researcher BCBL
www.jeiglesias.com
www.bcbl.eu
Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer
From: "Danielle Miller" <dmill...@bu.edu>
To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
Sent: Tuesday, October 27, 2015 4:40:57 PM
Subject: [Freesurfer] hippocampal subfield viewing
Hello,
I used recon-all -hippo subfields on an earlier version of free surfer (recon v
5.0, hippo v5.0 or 5.1). There is no documentation on your website on how to
view the subfields in freeview with versions earlier than 5.2. I noticed when I
load all the subfields into free view and use the color LUT file, the subfields
have pixelated colors at each voxel. Is there a way to view earlier versions of
this similar to what is presented on the website (i.e., where subfields are
represented by solid colors)? I assume this may be an issue with intensity
values in the image?
Thanks,
Danielle
--
Ph.D. Program in Behavioral Neuroscience
Boston University School of Medicine L-815
72 E. Concord St
Boston, MA 02118
VA Boston Healthcare System Jamaica Plain
Memory Disorders Research Center
150 South Huntington Ave D11-103
Boston, MA 02130
OFFICE:(857) 364-2130
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