Hi Jiook,
That is a bit weird. What was the error that you got on the left hemisphere?
In any case, 10 mins sounds about right. Does the output segmentation look ok?
Cheers,
Eugenio
Juan Eugenio Iglesias
Honorary Senior Research Associate
Translational Imaging Group
University College London
and
Postdoctoral researcher BCBL
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
www.bcbl.eu
Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer
From: "Jiook Cha"
To: "Eugenio Iglesias" , "Freesurfer support list"
Sent: Saturday, May 21, 2016 1:33:59 PM
Subject: hippocampal subfields analysis took 10 min
Dear Eugenio,
I had to run the hippocampal subfield segmentation analysis in Freesurfer v6
manually by running segmentSF_T1.sh program. When I call it through recon-all,
it only processed the left hemisphere but not the right. The issue is that
running segmentSF only took 10 min per hemisphere. I didn't use multicores.
Although the analysis resulted in all the files correctly, I am just concerned
if running this manually completed the analysis prematurely.
Sincerely,
Jiook
ᐧ
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