You can just use mri_concat file1.mgh file2.mgh ... fileN.mgh --o stack.mgh
On 08/25/2018 05:03 PM, Alon Baram wrote:
>
> External Email - Use Caution
>
> Hello,
>
> I have a surface measure calculated for each of my subjects, which I
> have already resampled and smoothed on fsaverage using mri_surf2surf,
> i.e for each subject I run:
> mri_surf2surf --hemi --s fsaverage --sval
> --fwhm --cortex --tval
> I now want to stack the outputs of the commands above, so that I can
> give the stacked image as an input to PALM. I think I should use
> mris_preproc for that, but I'm not sure if the subjects (the argument
> after the --s flags) should be the original subjects or fsaverage -
> given that my surface measures are already resampled to fsaverage.
>
> That is, I'm not sure if the correct command is (for 2 subjects)
>
> mris_preproc --out --target fsaverage --hemi
> *--s subj1 --s subj2* --is --is
>
>
> *or *
>
> mris_preproc --out --target fsaverage --hemi
> *--s fsaverage --s fsaverage* --is --is
>
>
> Thanks!
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
