Re: [Freesurfer] invalid command name PNG
I can probably upgrade it without a problem. The machine is running Panther, so would you recommend x-tad-smallerfreesurfer-Darwin-panther-v2.0.tar.gz /x-tad-smaller orx-tad-smaller freesurfer-Darwin-tiger-dev20051002-full.dmg /x-tad-smallerto try and install? (I'm guessing the first one, but I just want to be sure). Thanks very much. >Xander On Oct 7, 2005, at 12:49 PM, Nick Schmansky wrote: Xander, I haven't encountered this error message, and can't seem to track down its origin. Is it possible to upgrade your 2003 version of freesurfer to a newer version? If not, if you can email me the csurf file found in the $FREESURFER/bin directory, I might be able to figure out the problem. Nick On Thu, 2005-10-06 at 22:50 +0700, [EMAIL PROTECTED] wrote: Hi, I've got a Mac box running OS X 10.3.9 and Freesurfer ,v 1.3 2003/08/05 19: 19:16, and just recently when I start up freesurfer I get an error. To reproduce the error I do: source /Applications/Freesurfer/SetUpFreeSurfer.csh Setting up enviroment for FreeSurfer/FS-FAST $Id: FreeSurferEnv.csh,v 1.3 2003/08/05 19:19:16 kteich Exp $ FREESURFER_HOME /Applications/Freesurfer FSFAST_HOME /Applications/Freesurfer/fsfast AFNI_DIR/Applications/Freesurfer/afni FSL_DIR /Applications/Freesurfer/fsl SUBJECTS_DIR/Users/xmeadow/subjects csurf Application initialization failed: invalid command name PNG Then Freesurfer opens up normally. I was just wondering what this error message means. I've looked online and seen that PNG stands for 'Portable Network Graphics' (I think), but I don't know if I have it installed or if I need it installed. Is there something I can do to get Freesurfer to load without errors? Thanks very much. Xander ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] invalid command name PNG
Xander, Try using freesurfer-Darwin-tiger-dev20051002-full.dmg to upgrade. It should run on panther. Nick On Mon, 2005-10-10 at 09:47 -0500, Xander Meadow wrote: __ I can probably upgrade it without a problem. The machine is running Panther, so would you recommend freesurfer-Darwin-panther-v2.0.tar.gz or freesurfer-Darwin-tiger-dev20051002-full.dmg to try and install? (I'm guessing the first one, but I just want to be sure). Thanks very much. Xander On Oct 7, 2005, at 12:49 PM, Nick Schmansky wrote: Xander, I haven't encountered this error message, and can't seem to track down its origin. Is it possible to upgrade your 2003 version of freesurfer to a newer version? If not, if you can email me the csurf file found in the $FREESURFER/bin directory, I might be able to figure out the problem. Nick On Thu, 2005-10-06 at 22:50 +0700, [EMAIL PROTECTED] wrote: Hi, I've got a Mac box running OS X 10.3.9 and Freesurfer ,v 1.3 2003/08/05 19: 19:16, and just recently when I start up freesurfer I get an error. To reproduce the error I do: source /Applications/Freesurfer/SetUpFreeSurfer.csh Setting up enviroment for FreeSurfer/FS-FAST $Id: FreeSurferEnv.csh,v 1.3 2003/08/05 19:19:16 kteich Exp $ FREESURFER_HOME /Applications/Freesurfer FSFAST_HOME /Applications/Freesurfer/fsfast AFNI_DIR/Applications/Freesurfer/afni FSL_DIR /Applications/Freesurfer/fsl SUBJECTS_DIR/Users/xmeadow/subjects csurf Application initialization failed: invalid command name PNG Then Freesurfer opens up normally. I was just wondering what this error message means. I've looked online and seen that PNG stands for 'Portable Network Graphics' (I think), but I don't know if I have it installed or if I need it installed. Is there something I can do to get Freesurfer to load without errors? Thanks very much. Xander ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] invalid command name PNG
Hi,
Since I'm running Panther I downloaded: x-tad-smallerfreesurfer-Darwin-panther-v2.0.tar.gz/x-tad-smaller and tried to set it up. I got it downloaded and I set up the SetUpFreeSurfer.csh file. But at the beginning of the freesurfer/bin/csurf file is the following lines:
# force local (next line not seen by tcl) \
exec /usr/sw/bin/tixwish4.1.8.3 $0 ${1+$@}# goto tcl8.3
#exec $LOCAL_DIR/bin/`uname -s`/tixwish4.1.7.4 $0 ${1+$@}# goto tcl7.4
I'm not sure what to make of them except that I get an error when I try to run csurf because I don't have /usr/sw/bin/tixwish4.1.8.3. Am I downloading the wrong file? Or do I just have the settings messed up again? Thanks very much.
>Xander
On Oct 7, 2005, at 12:49 PM, Nick Schmansky wrote:
Xander,
I haven't encountered this error message, and can't seem to track down
its origin. Is it possible to upgrade your 2003 version of freesurfer
to a newer version? If not, if you can email me the csurf file found in
the $FREESURFER/bin directory, I might be able to figure out the
problem.
Nick
On Thu, 2005-10-06 at 22:50 +0700, [EMAIL PROTECTED] wrote:
Hi,
I've got a Mac box running OS X 10.3.9 and Freesurfer ,v 1.3 2003/08/05 19:
19:16, and just recently when I start up freesurfer I get an error. To reproduce
the error I do:
source /Applications/Freesurfer/SetUpFreeSurfer.csh
Setting up enviroment for FreeSurfer/FS-FAST
$Id: FreeSurferEnv.csh,v 1.3 2003/08/05 19:19:16 kteich Exp $
FREESURFER_HOME /Applications/Freesurfer
FSFAST_HOME /Applications/Freesurfer/fsfast
AFNI_DIR/Applications/Freesurfer/afni
FSL_DIR /Applications/Freesurfer/fsl
SUBJECTS_DIR/Users/xmeadow/subjects
csurf
Application initialization failed: invalid command name PNG
Then Freesurfer opens up normally. I was just wondering what this error
message means. I've looked online and seen that PNG stands for 'Portable
Network Graphics' (I think), but I don't know if I have it installed or if I need it
installed. Is there something I can do to get Freesurfer to load without errors?
Thanks very much.
Xander
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] invalid command name PNG
For this installation of Freesurfer, you would need to edit csurf to
change the line '/usr/sw/bin/tixwish4.1.8.3' to point to your own
installation of tixwish, which is not distributed with this freesurfer
installation. The newer dev installation does include it though, so you
may have better luck installing it.
On Mon, 2005-10-10 at 16:28 -0500, Xander Meadow wrote:
__
Hi,
Since I'm running Panther I downloaded: freesurfer-Darwin-panther-
v2.0.tar.gz and tried to set it up. I got it downloaded and I set up
the SetUpFreeSurfer.csh file. But at the beginning of the
freesurfer/bin/csurf file is the following lines:
# force local (next line not seen by tcl) \
exec /usr/sw/bin/tixwish4.1.8.3 $0 ${1+$@}# goto tcl8.3
#exec $LOCAL_DIR/bin/`uname -s`/tixwish4.1.7.4 $0 ${1+$@}# goto
tcl7.4
I'm not sure what to make of them except that I get an error when I
try to run csurf because I don't have /usr/sw/bin/tixwish4.1.8.3. Am
I downloading the wrong file? Or do I just have the settings messed
up again? Thanks very much.
Xander
On Oct 7, 2005, at 12:49 PM, Nick Schmansky wrote:
Xander,
I haven't encountered this error message, and can't seem to
track down
its origin. Is it possible to upgrade your 2003 version of
freesurfer
to a newer version? If not, if you can email me the csurf
file found in
the $FREESURFER/bin directory, I might be able to figure out
the
problem.
Nick
On Thu, 2005-10-06 at 22:50 +0700, [EMAIL PROTECTED] wrote:
Hi,
I've got a Mac box running OS X 10.3.9 and
Freesurfer ,v 1.3 2003/08/05 19:
19:16, and just recently when I start up freesurfer I
get an error. To reproduce
the error I do:
source /Applications/Freesurfer/SetUpFreeSurfer.csh
Setting up enviroment for FreeSurfer/FS-FAST
$Id: FreeSurferEnv.csh,v 1.3 2003/08/05 19:19:16
kteich Exp $
FREESURFER_HOME /Applications/Freesurfer
FSFAST_HOME /Applications/Freesurfer/fsfast
AFNI_DIR/Applications/Freesurfer/afni
FSL_DIR /Applications/Freesurfer/fsl
SUBJECTS_DIR/Users/xmeadow/subjects
csurf
Application initialization failed: invalid command
name PNG
Then Freesurfer opens up normally. I was just
wondering what this error
message means. I've looked online and seen that PNG
stands for 'Portable
Network Graphics' (I think), but I don't know if I
have it installed or if I need it
installed. Is there something I can do to get
Freesurfer to load without errors?
Thanks very much.
Xander
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] invalid command name PNG
Xander, I haven't encountered this error message, and can't seem to track down its origin. Is it possible to upgrade your 2003 version of freesurfer to a newer version? If not, if you can email me the csurf file found in the $FREESURFER/bin directory, I might be able to figure out the problem. Nick On Thu, 2005-10-06 at 22:50 +0700, [EMAIL PROTECTED] wrote: Hi, I've got a Mac box running OS X 10.3.9 and Freesurfer ,v 1.3 2003/08/05 19: 19:16, and just recently when I start up freesurfer I get an error. To reproduce the error I do: source /Applications/Freesurfer/SetUpFreeSurfer.csh Setting up enviroment for FreeSurfer/FS-FAST $Id: FreeSurferEnv.csh,v 1.3 2003/08/05 19:19:16 kteich Exp $ FREESURFER_HOME /Applications/Freesurfer FSFAST_HOME /Applications/Freesurfer/fsfast AFNI_DIR/Applications/Freesurfer/afni FSL_DIR /Applications/Freesurfer/fsl SUBJECTS_DIR/Users/xmeadow/subjects csurf Application initialization failed: invalid command name PNG Then Freesurfer opens up normally. I was just wondering what this error message means. I've looked online and seen that PNG stands for 'Portable Network Graphics' (I think), but I don't know if I have it installed or if I need it installed. Is there something I can do to get Freesurfer to load without errors? Thanks very much. Xander ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] invalid command name PNG
Hi, I've got a Mac box running OS X 10.3.9 and Freesurfer ,v 1.3 2003/08/05 19: 19:16, and just recently when I start up freesurfer I get an error. To reproduce the error I do: source /Applications/Freesurfer/SetUpFreeSurfer.csh Setting up enviroment for FreeSurfer/FS-FAST $Id: FreeSurferEnv.csh,v 1.3 2003/08/05 19:19:16 kteich Exp $ FREESURFER_HOME /Applications/Freesurfer FSFAST_HOME /Applications/Freesurfer/fsfast AFNI_DIR/Applications/Freesurfer/afni FSL_DIR /Applications/Freesurfer/fsl SUBJECTS_DIR/Users/xmeadow/subjects csurf Application initialization failed: invalid command name PNG Then Freesurfer opens up normally. I was just wondering what this error message means. I've looked online and seen that PNG stands for 'Portable Network Graphics' (I think), but I don't know if I have it installed or if I need it installed. Is there something I can do to get Freesurfer to load without errors? Thanks very much. Xander ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
