Re: [Freesurfer] License error on Windows Subsystem for Linux

[Hoopes, Andrew]

Thanks Lunhao, I will follow up with you temporarily off-list to test some 
things out.
Andrew

From:  on behalf of Shen Lunhao 

Reply-To: FS Help 
Date: Monday, November 23, 2020 at 1:27 AM
To: FS Help 
Subject: Re: [Freesurfer] License error on Windows Subsystem for Linux


External Email - Use Caution
Hi Andrew,

The following is the information of four systems. System #3 and #4 are same 
configuration where license error occurred.
#1
#2
#3
#4
Core
Intel(R) Xeon(R) CPU E5-2620
Intel i7
AMD R9 5900X
AMD R9 5900X
Mem
32GB
16GB
32GB
32GB
Platform
Linux version 4.15.0-112-generic (buildd@lcy01-amd64-027) (gcc version 7.5.0 
(Ubuntu 7.5.0-3ubuntu1~18.04))
Window subsystem for linux(WSL2) + Ubuntu20.04
Window subsystem for linux(WSL2) + Ubuntu20.04
Window subsystem for linux(WSL2) + Ubuntu20.04
Worked
Worked
Didn’t work
Didn’t work
The freesurfer package I used is 
freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0which downloaded from 
freesurfer website. The license file was four lines type. Hope this information 
is helpful.

Thanks,
Lunhao


From: freesurfer-boun...@nmr.mgh.harvard.edu 
 代表 Hoopes, Andrew 

Date: 2020年11月21日 1:19
Reply-To: Freesurfer support list 
Subject: Re: [Freesurfer] License error on Windows Subsystem for Linux


Hi Lunhao,



Interesting. Can you provide some details on the configurations where this 
worked? Were you using the same linux subsystem and windows versions?



thanks

Andrew



From:  on behalf of Shen Lunhao 

Reply-To: FS Help 
Date: Friday, November 20, 2020 at 2:44 AM
To: FS Help 
Subject: [Freesurfer] License error on Windows Subsystem for Linux



External Email - Use Caution

Hello FreeSurfer Developers,



I'm attempting to use freesurfer 5.3.0 on Windows Subsystem for Linux (Ubuntu 
20.04), but I got license error message as described below:



--

ERROR: Invalid FreeSurfer license key found in license file 
/space/tools/freesurfer/5.3.0/license.txt

  If you are outside the NMR-Martinos Center,

  go to http://surfer.nmr.mgh.harvard.edu to

  get a valid license file (it's free).

  If you are inside the NMR-Martinos Center,

  make sure to source the standard environment.

--



I tried with the same 5.3.0 packages and same license file on four different 
computers, and two of them work well with the other two got similar license 
error. Does anyone have any thoughts on how to trouble-shoot this one?



1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0

2) Platform: Windows Subsystem for Linux (Ubuntu 20.04)

3) uname -a: Linux DESKTOP-SJ2K1B2 4.4.0-19041-Microsoft #488-Microsoft Mon Sep 
01 13:43:00 PST 2020 x86_64 x86_64 x86_64 GNU/Linux


Best,
Lunhao


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Re: [Freesurfer] License error on Windows Subsystem for Linux

[Shen Lunhao]

External Email - Use Caution

Hi Andrew,

The following is the information of four systems. System #3 and #4 are same 
configuration where license error occurred.

#1  #2  #3  #4
CoreIntel(R) Xeon(R) CPU E5-2620Intel i7AMD R9 5900XAMD R9 
5900X
Mem 32GB16GB32GB32GB
PlatformLinux version 4.15.0-112-generic (buildd@lcy01-amd64-027) (gcc 
version 7.5.0 (Ubuntu 7.5.0-3ubuntu1~18.04)) Window subsystem for 
linux(WSL2) + Ubuntu20.04  Window subsystem for linux(WSL2) + Ubuntu20.04  
Window subsystem for linux(WSL2) + Ubuntu20.04

Worked  Worked  Didn’t work Didn’t work
The freesurfer package I used is 
freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0which downloaded from 
freesurfer website. The license file was four lines type. Hope this information 
is helpful.

Thanks,
Lunhao


From: freesurfer-boun...@nmr.mgh.harvard.edu 
 代表 Hoopes, Andrew 

Date: 2020年11月21日 1:19
Reply-To: Freesurfer support list 
Subject: Re: [Freesurfer] License error on Windows Subsystem for Linux


Hi Lunhao,



Interesting. Can you provide some details on the configurations where this 
worked? Were you using the same linux subsystem and windows versions?



thanks

Andrew



From:  on behalf of Shen Lunhao 

Reply-To: FS Help 
Date: Friday, November 20, 2020 at 2:44 AM
To: FS Help 
Subject: [Freesurfer] License error on Windows Subsystem for Linux



External Email - Use Caution

Hello FreeSurfer Developers,



I'm attempting to use freesurfer 5.3.0 on Windows Subsystem for Linux (Ubuntu 
20.04), but I got license error message as described below:



--

ERROR: Invalid FreeSurfer license key found in license file 
/space/tools/freesurfer/5.3.0/license.txt

  If you are outside the NMR-Martinos Center,

  go to 
http://secure-web.cisco.com/1gwoaE20Y7b27ULq16GgvwkvDuYOzRdARFYzw1XJCoskz3-oj6huJndWIuxVbk0yVCvgdNi0Oj7GVdtZArfy5iumc2YeEOL6EISaDDZGWxaxL72Jxeq5-rM4PosrAs61L--DGrGQ-qb6mJmz6fxO60OjBUnCaZo11TNmUIUXHBpMTl4hR5bCGLuyCBsEOIcsOAMKVpo5pMFchOkNgp8Uz33jMejFvHUvBttqS1GYSr4rTD6rFCPd5-FxiOBOmu03bHcOZxB8Piql-cfJGw_9i9Q/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu
 to

  get a valid license file (it's free).

  If you are inside the NMR-Martinos Center,

  make sure to source the standard environment.

--



I tried with the same 5.3.0 packages and same license file on four different 
computers, and two of them work well with the other two got similar license 
error. Does anyone have any thoughts on how to trouble-shoot this one?



1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0

2) Platform: Windows Subsystem for Linux (Ubuntu 20.04)

3) uname -a: Linux DESKTOP-SJ2K1B2 4.4.0-19041-Microsoft #488-Microsoft Mon Sep 
01 13:43:00 PST 2020 x86_64 x86_64 x86_64 GNU/Linux


Best,
Lunhao


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Re: [Freesurfer] License error on Windows Subsystem for Linux

[Hoopes, Andrew]

Hi Lunhao,

Interesting. Can you provide some details on the configurations where this 
worked? Were you using the same linux subsystem and windows versions?

thanks
Andrew

From:  on behalf of Shen Lunhao 

Reply-To: FS Help 
Date: Friday, November 20, 2020 at 2:44 AM
To: FS Help 
Subject: [Freesurfer] License error on Windows Subsystem for Linux


External Email - Use Caution

Hello FreeSurfer Developers,



I'm attempting to use freesurfer 5.3.0 on Windows Subsystem for Linux (Ubuntu 
20.04), but I got license error message as described below:



--

ERROR: Invalid FreeSurfer license key found in license file 
/space/tools/freesurfer/5.3.0/license.txt

  If you are outside the NMR-Martinos Center,

  go to http://surfer.nmr.mgh.harvard.edu to

  get a valid license file (it's free).

  If you are inside the NMR-Martinos Center,

  make sure to source the standard environment.

--



I tried with the same 5.3.0 packages and same license file on four different 
computers, and two of them work well with the other two got similar license 
error. Does anyone have any thoughts on how to trouble-shoot this one?



1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0

2) Platform: Windows Subsystem for Linux (Ubuntu 20.04)

3) uname -a: Linux DESKTOP-SJ2K1B2 4.4.0-19041-Microsoft #488-Microsoft Mon Sep 
01 13:43:00 PST 2020 x86_64 x86_64 x86_64 GNU/Linux


Best,
Lunhao

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[Freesurfer] License error on Windows Subsystem for Linux

[Shen Lunhao]

External Email - Use Caution

Hello FreeSurfer Developers,

I'm attempting to use freesurfer 5.3.0 on Windows Subsystem for Linux (Ubuntu 
20.04), but I got license error message as described below:

--
ERROR: Invalid FreeSurfer license key found in license file 
/space/tools/freesurfer/5.3.0/license.txt
  If you are outside the NMR-Martinos Center,
  go to 
http://secure-web.cisco.com/1mRpyN1Z9v5JHXH1zmAAAeYDA0yZIV6qPhpsQo-ZvQydU0BsAgoRyytnzupnjsTXtbvmfZv0fjwv25HsbHIobZri0bpkM-XwOr1IsM78gUPkDDVuGS1Xb20nKdaYx1KxDZAoRSvf41cZYxec6Ss3htkHeSVoLBag1ALhXcc3XM_4IC9yE8mrbBGQl4InrpUrJ6RzC-AN6cGZ8mak_jATZSn0cSqKTzNhXJWaiMF5fpBM_MsRUAoHBqtOedYK-ld9uP2m4FZk0dwnKv2mOa4TrUg/http%3A%2F%2Fsurfer.nmr.mgh.harvard.edu
 to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.
--

I tried with the same 5.3.0 packages and same license file on four different 
computers, and two of them work well with the other two got similar license 
error. Does anyone have any thoughts on how to trouble-shoot this one?

1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
2) Platform: Windows Subsystem for Linux (Ubuntu 20.04)
3) uname -a: Linux DESKTOP-SJ2K1B2 4.4.0-19041-Microsoft #488-Microsoft Mon Sep 
01 13:43:00 PST 2020 x86_64 x86_64 x86_64 GNU/Linux


Best,
Lunhao

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Re: [Freesurfer] license error

[Tim Schäfer]

External Email - Use Caution

Where did you place the license file you obtained? From the output of that 
program which at some point calls `mri_convert`, it seems that it is working 
with 2 different FreeSurfer versions in different paths:

> FreeSurfer0.8 from CSURF_DIR=/opt/csurf
> MGH freesurfer from FSURF_DIR=/opt/freesurfer

Could it be that one of them is configured incorrectly?

I guess you would have to find out which `mri_convert` binary is actually being 
called. I would suggest to manually run both and see which one fails. E.g.:

cd path_to_some_backup_of_a_subject/surf/
/opt/csurf/bin/mris_convert lh.pial lh.pial.asc# test the first one
/opt/freesurfer/bin/mris_convert lh.pial lh.pial.asc# test the other one

One of them will fail. Fix the license for that one.

Tim

> On November 12, 2019 at 1:05 PM Francesca Strappini 
>  wrote:
> 
> 
> External Email - Use Caution
> 
> Dear FreeSurfer experts,
> 
> I'm trying to convert FreeSurfer surfaces to afni format.
> I run this command line but I got an error message about the license
> although I've updated it.
> 
> francesca-desktop:/opt/freesurfer/subjects/PP> @SUMA_Make_Spec_FS  -NIFTI
> -sid PP
> 
> FreeSurferEnv.csh (vers=13) requires csh/tcsh -- current shell:
> FreeSurferEnv.csh: CSURF_DIR reset to current dir
> ---
> csurf font changes:
>  xset fp default (reset to default)
>  xset +fp /opt/csurf/lib/fonts/75dpi-helvetica
>  xset fp rehash
> ---
> csurf setenv changes:
>  CSURF_DIR=/opt/csurf
>  SUBJECTS_DIR=/opt/freesurfer/subjects
>  FUNCTIONALS_DIR=/opt/csurf/sessions
>  TCL_LIBRARY=/opt/csurf/tcltktix/lib/noarch/tcl8.5
>  TK_LIBRARY=/opt/csurf/tcltktix/lib/noarch/tk8.5
>  [dist=Ubuntu]
>  pre-appended to LD_LIBRARY_PATH:
>   + /opt/csurf/tcltktix/lib/Linux-x86_64
>   + /opt/csurf/gsl/lib/Linux-x86_64
>   + /opt/csurf/lib/Linux-x86_64
>   + /opt/csurf/afni/lib/Linux-x86_64
> ---
> pre-appended to csh path:
>   + /opt/csurf/afni/bin/Linux-x86_64
>   + /opt/csurf/mni_autoreg/bin/Linux-x86_64
>   + /opt/csurf/tcltktix/bin/Linux-x86_64
>   + /opt/csurf/bin/Linux-x86_64
>   + /opt/csurf/bin/noarch
> ---
> other setenv changes (mostly bak compat):
>  FREESURFER_HOME=/opt/csurf (mri_surf2surf)
>  AFNI_PLUGINPATH=/opt/csurf/afni/lib/Linux-x86_64
>  DIAG=0x4040 (surfer bins 2000)
>  MRI_DIR=/opt/csurf (surfer bins 2000)
>  PERL5LIB=/opt/csurf/mni_autoreg/perl (MNI)
>  MNI_CONFIG_PATH=/opt/csurf/mni_autoreg/cfg (MNI)
>  LANG=en_US (RH9)
> ---
> FreeSurfer0.8 from CSURF_DIR=/opt/csurf
> MGH freesurfer from FSURF_DIR=/opt/freesurfer
> 
> surf directory found at './subjects/fsaverage-ADDITIONS/surf'
> 
> consider running program from './subjects/fsaverage-ADDITIONS'
> program failure: exiting...
> 
> francesca-desktop:/opt/freesurfer/subjects/PP> @SUMA_Make_Spec_FS -fspath
> /opt/freesurfer/subjects/PP -NIFTI -sid PP
> 
> FreeSurferEnv.csh (vers=13) requires csh/tcsh -- current shell:
> FreeSurferEnv.csh: CSURF_DIR reset to current dir
> ---
> csurf font changes:
>  xset fp default (reset to default)
>  xset +fp /opt/csurf/lib/fonts/75dpi-helvetica
>  xset fp rehash
> ---
> csurf setenv changes:
>  CSURF_DIR=/opt/csurf
>  SUBJECTS_DIR=/opt/freesurfer/subjects
>  FUNCTIONALS_DIR=/opt/csurf/sessions
>  TCL_LIBRARY=/opt/csurf/tcltktix/lib/noarch/tcl8.5
>  TK_LIBRARY=/opt/csurf/tcltktix/lib/noarch/tk8.5
>  [dist=Ubuntu]
>  pre-appended to LD_LIBRARY_PATH:
>   + /opt/csurf/tcltktix/lib/Linux-x86_64
>   + /opt/csurf/gsl/lib/Linux-x86_64
>   + /opt/csurf/lib/Linux-x86_64
>   + /opt/csurf/afni/lib/Linux-x86_64
> ---
> pre-appended to csh path:
>   + /opt/csurf/afni/bin/Linux-x86_64
>   + /opt/csurf/mni_autoreg/bin/Linux-x86_64
>   + /opt/csurf/tcltktix/bin/Linux-x86_64
>   + /opt/csurf/bin/Linux-x86_64
>   + /opt/csurf/bin/noarch
> ---
> other setenv changes (mostly bak compat):
>  FREESURFER_HOME=/opt/csurf (mri_surf2surf)
>  AFNI_PLUGINPATH=/opt/csurf/afni/lib/Linux-x86_64
>  DIAG=0x4040 (surfer bins 2000)
>  MRI_DIR=/opt/csurf (surfer bins 2000)
>  PERL5LIB=/opt/csurf/mni_autoreg/perl (MNI)
>  MNI_CONFIG_PATH=/opt/csurf/mni_autoreg/cfg (MNI)
>  LANG=en_US (RH9)
> ---
> FreeSurfer0.8 from CSURF_DIR=/opt/csurf
> MGH freesurfer from FSURF_DIR=/opt/freesurfer
> 
> ++ creating directory './SUMA' for results...
> -- found 6 LH surfaces
> -- found 

[Freesurfer] license error

[Francesca Strappini]

External Email - Use Caution

Dear FreeSurfer experts,

I'm trying to convert FreeSurfer surfaces to afni format.
I run this command line but I got an error message about the license
although I've updated it.

francesca-desktop:/opt/freesurfer/subjects/PP> @SUMA_Make_Spec_FS  -NIFTI
-sid PP

FreeSurferEnv.csh (vers=13) requires csh/tcsh -- current shell:
FreeSurferEnv.csh: CSURF_DIR reset to current dir
---
csurf font changes:
 xset fp default (reset to default)
 xset +fp /opt/csurf/lib/fonts/75dpi-helvetica
 xset fp rehash
---
csurf setenv changes:
 CSURF_DIR=/opt/csurf
 SUBJECTS_DIR=/opt/freesurfer/subjects
 FUNCTIONALS_DIR=/opt/csurf/sessions
 TCL_LIBRARY=/opt/csurf/tcltktix/lib/noarch/tcl8.5
 TK_LIBRARY=/opt/csurf/tcltktix/lib/noarch/tk8.5
 [dist=Ubuntu]
 pre-appended to LD_LIBRARY_PATH:
  + /opt/csurf/tcltktix/lib/Linux-x86_64
  + /opt/csurf/gsl/lib/Linux-x86_64
  + /opt/csurf/lib/Linux-x86_64
  + /opt/csurf/afni/lib/Linux-x86_64
---
pre-appended to csh path:
  + /opt/csurf/afni/bin/Linux-x86_64
  + /opt/csurf/mni_autoreg/bin/Linux-x86_64
  + /opt/csurf/tcltktix/bin/Linux-x86_64
  + /opt/csurf/bin/Linux-x86_64
  + /opt/csurf/bin/noarch
---
other setenv changes (mostly bak compat):
 FREESURFER_HOME=/opt/csurf (mri_surf2surf)
 AFNI_PLUGINPATH=/opt/csurf/afni/lib/Linux-x86_64
 DIAG=0x4040 (surfer bins 2000)
 MRI_DIR=/opt/csurf (surfer bins 2000)
 PERL5LIB=/opt/csurf/mni_autoreg/perl (MNI)
 MNI_CONFIG_PATH=/opt/csurf/mni_autoreg/cfg (MNI)
 LANG=en_US (RH9)
---
FreeSurfer0.8 from CSURF_DIR=/opt/csurf
MGH freesurfer from FSURF_DIR=/opt/freesurfer

surf directory found at './subjects/fsaverage-ADDITIONS/surf'

consider running program from './subjects/fsaverage-ADDITIONS'
program failure: exiting...

francesca-desktop:/opt/freesurfer/subjects/PP> @SUMA_Make_Spec_FS -fspath
/opt/freesurfer/subjects/PP -NIFTI -sid PP

FreeSurferEnv.csh (vers=13) requires csh/tcsh -- current shell:
FreeSurferEnv.csh: CSURF_DIR reset to current dir
---
csurf font changes:
 xset fp default (reset to default)
 xset +fp /opt/csurf/lib/fonts/75dpi-helvetica
 xset fp rehash
---
csurf setenv changes:
 CSURF_DIR=/opt/csurf
 SUBJECTS_DIR=/opt/freesurfer/subjects
 FUNCTIONALS_DIR=/opt/csurf/sessions
 TCL_LIBRARY=/opt/csurf/tcltktix/lib/noarch/tcl8.5
 TK_LIBRARY=/opt/csurf/tcltktix/lib/noarch/tk8.5
 [dist=Ubuntu]
 pre-appended to LD_LIBRARY_PATH:
  + /opt/csurf/tcltktix/lib/Linux-x86_64
  + /opt/csurf/gsl/lib/Linux-x86_64
  + /opt/csurf/lib/Linux-x86_64
  + /opt/csurf/afni/lib/Linux-x86_64
---
pre-appended to csh path:
  + /opt/csurf/afni/bin/Linux-x86_64
  + /opt/csurf/mni_autoreg/bin/Linux-x86_64
  + /opt/csurf/tcltktix/bin/Linux-x86_64
  + /opt/csurf/bin/Linux-x86_64
  + /opt/csurf/bin/noarch
---
other setenv changes (mostly bak compat):
 FREESURFER_HOME=/opt/csurf (mri_surf2surf)
 AFNI_PLUGINPATH=/opt/csurf/afni/lib/Linux-x86_64
 DIAG=0x4040 (surfer bins 2000)
 MRI_DIR=/opt/csurf (surfer bins 2000)
 PERL5LIB=/opt/csurf/mni_autoreg/perl (MNI)
 MNI_CONFIG_PATH=/opt/csurf/mni_autoreg/cfg (MNI)
 LANG=en_US (RH9)
---
FreeSurfer0.8 from CSURF_DIR=/opt/csurf
MGH freesurfer from FSURF_DIR=/opt/freesurfer

++ creating directory './SUMA' for results...
-- found 6 LH surfaces
-- found 6 RH surfaces
mri_convert -ot nii /opt/freesurfer/subjects/PP/mri/orig.mgz
/opt/freesurfer/subjects/PP/./SUMA/orig.nii
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /opt/freesurfer/subjects/PP/mri/orig.mgz...
TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, -3.72529e-09, 3.72529e-09)
j_ras = (0, -1.16415e-10, -1)
k_ras = (0, 1, -1.22236e-09)
writing to /opt/freesurfer/subjects/PP/./SUMA/orig.nii...
++ created AFNI file './SUMA/PP_SurfVol.nii'
Made roi label table for AFNI - fs_table.niml.lt
mri_convert -ot nii mri/T1.mgz /opt/freesurfer/subjects/PP/./SUMA/T1.nii
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from mri/T1.mgz...
TR=2300.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, -3.72529e-09, 3.72529e-09)
j_ras = (0, -1.16415e-10, -1)
k_ras = (0, 1, -1.22236e-09)
writing to /opt/freesurfer/subjects/PP/./SUMA/T1.nii...
mri_convert -ot nii mri/aparc+aseg.mgz
/opt/freesurfer/subjects/PP/./SUMA/aparc+aseg.nii
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from mri/aparc+aseg.mgz...

Re: [Freesurfer] license error

[Ritesh Mahajan]

Thanks for reply. Even that is not working for me. I using ubuntu machine. 

Thanks, 
Ritesh Mahajan 


From: "Benjamin Luerweg" <luer...@students.uni-marburg.de> 
To: "freesurfer" <freesurfer@nmr.mgh.harvard.edu> 
Sent: Thursday, September 14, 2017 4:54:30 PM 
Subject: Re: [Freesurfer] license error 

Beside that I recognised that some issues with the license file are based on 
the following aspect: 

While running freesurfer on Mac OS it Didn't work for me creating the license 
file under Mac OS itself. 
I realised that after creating the file under windows 10 and copying that file 
back to mac freesurfer started without an error. 



Kind regards, 
B. Luerweg 

_ 
Benjamin Luerweg 
Deutschhausstraße 8 
35037 Marburg 
0049 1575 444 14 14 




Am 14.09.2017 um 11:57 schrieb Ritesh Mahajan < ritesh.maha...@ripl.ricoh.com 
>: 




Hello team, 

I created the license.txt at location FREESURFER_HOME and pasted the lines sent 
to me after registration. Still i find the following errors. 

"ERROR: FreeSurfer license file /usr/local/freesurfer/.license not found. 
If you are outside the NMR-Martinos Center, 
go to http://surfer.nmr.mgh.harvard.edu to 
get a valid license file (it's free). 
If you are inside the NMR-Martinos Center, 
make sure to source the standard environment" 

Thanks, 
Ritesh Mahajan 
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Re: [Freesurfer] license error

[Benjamin Luerweg]

Beside that I recognised that some issues with the license file are based on 
the following aspect:

While running freesurfer on Mac OS it   Didn't work for me creating the license 
file under Mac OS itself. 
I realised that after creating the file under windows 10 and copying that file 
back to mac freesurfer started without an error. 



Kind regards,
B. Luerweg

_
Benjamin Luerweg
Deutschhausstraße 8
35037 Marburg
0049 1575 444 14 14




> Am 14.09.2017 um 11:57 schrieb Ritesh Mahajan :
> 
> Hello team,
> 
> I created the license.txt at location FREESURFER_HOME and pasted the lines 
> sent to me after registration. Still i find the following errors.
> 
> "ERROR: FreeSurfer license file /usr/local/freesurfer/.license not found.
>  If you are outside the NMR-Martinos Center,
>  go to http://surfer.nmr.mgh.harvard.edu to
>  get a valid license file (it's free).
>  If you are inside the NMR-Martinos Center,
>  make sure to source the standard environment"
> 
> Thanks, 
> Ritesh Mahajan
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> 
> 
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine 
> at
> http://www.partners.org/complianceline . If the e-mail was sent to you in 
> error
> but does not contain patient information, please contact the sender and 
> properly
> dispose of the e-mail.
> 
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[Freesurfer] license error

[Ritesh Mahajan]

Hello team,

I created the license.txt at location FREESURFER_HOME and pasted the lines sent 
to me after registration. Still i find the following errors.

"ERROR: FreeSurfer license file /usr/local/freesurfer/.license not found.
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment"

Thanks, 
Ritesh Mahajan
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Re: [Freesurfer] license error

[Z K]

Hello,

You say the .license file is in your applications folder but it's 
supposed to be located in your /Applications/freesurfer folder.

If /Applications/freesurfer/.license does exist on your machine, than 
please make absolutely sure it exactly matches the email sent to you 
after you registered.

Lastly, if neither of the above cases solves the problem, please send me 
your .license file *TO MY DIRECT EMAIL ADDRESS* (not the freesurfer 
list!) so I may examine it. Thanks.

-Zeke



On 08/18/2015 02:51 PM, Frank Kanayet wrote:
 Hi, I just installed freesurfer on my computer and included the
 license.txt film in the applications folder but when I tried to use the
 tkmedit bert orig.mgz to test the installation I received a message
 saying that ERROR: FreeSurfer license file
 /Applications/freesurfer/license not found.

If you are outside the NMR-Martinos Center,

go to http://surfer.nmr.mgh.harvard.edu
 http://surfer.nmr.mgh.harvard.edu/ to

get a valid license file (it's free).

If you are inside the NMR-Martinos Center,

make sure to source the standard environment.


 Can you help me figure out what is the mistake?


 Thanks,


 --
 **
 Frank J. Kanayet, Ph.D.
 Stanford University
 420 Jordan Hall, Room 342

 **


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[Freesurfer] license error

[Frank Kanayet]

Hi, I just installed freesurfer on my computer and included the license.txt
film in the applications folder but when I tried to use the tkmedit bert
orig.mgz to test the installation I received a message saying that ERROR:
FreeSurfer license file /Applications/freesurfer/.license not found.

  If you are outside the NMR-Martinos Center,

  go to http://surfer.nmr.mgh.harvard.edu to

  get a valid license file (it's free).

  If you are inside the NMR-Martinos Center,

  make sure to source the standard environment.


Can you help me figure out what is the mistake?


Thanks,

-- 
**
Frank J. Kanayet, Ph.D.
Stanford University
420 Jordan Hall, Room 342

**
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Re: [Freesurfer] license error with FS5.3

[S.V.Shepherd [work]]

Solved: The license file actually differed from the other installations in
that the #cut here- lines were included. To my embarrassment, it
took a second pair of eyes to notice this. I thought I'd fess up lest
anyone else make the same mistake.

stephen
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Re: [Freesurfer] license error with FS5.3

[Bruce Fischl]

thanks Stephen :)

Bruce

On Fri, 13 Sep 2013, S.V.Shepherd [work] wrote:

 Solved: The license file actually differed from the other installations in
 that the #cut here- lines were included. To my embarrassment, it
 took a second pair of eyes to notice this. I thought I'd fess up lest anyone
 else make the same mistake.
 
 stephen
 

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[Freesurfer] license error with FS5.3

[S.V.Shepherd [work]]

I wanted to bump this:

I have license errors with FS 5.3 that don't appear for
equivalently-configured FS 5.1 and FS 4.5 installations. How shall I
troubleshoot?

SYMPTOMS:

$ mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz
mri_convert
/space/opt/freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0-full/subjects/bert/mri/T1.mgz
T1.mgz
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from
/space/opt/freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0-full/subjects/bert/mri/T1.mgz...
--
ERROR: Invalid FreeSurfer license key found in license file
/space/opt/freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0-full/.license
--
$ bugr
FREESURFER_HOME:
/space/opt/freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0-full
Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0
RedHat release: Red Hat Enterprise Linux Server release 5.9 (Tikanga)
Kernel info: Linux 2.6.18-308.4.1.el5 x86_64

LICENSE

The license file is the same as we use for our other FS installations,
which work. I've also tried copying it from .license to license, which
didn't solve the problem.


Please let me know if you have any leads or suggestions.

*stephen v. shepherd   phd*
The Rockefeller University / 1230 York Avenue / New York NY 10065-6307 USA
// 212.327.7620
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[Freesurfer] license error with FS5.3

[S.V.Shepherd [work]]

I see some reports of license failures, and seem to be having a similar
problem. Our installations of 4.5 and 5.1 work normally, but with 5.3 I had
a mysterious error in unpacksdcmdir that ultimately traced to a license
error in mri_convert. I can reproduce the error like so:

*mri_convert $FREESURFER_HOME/subjects/bert/mri/T1.mgz T1.mgz*

mri_convert
/space/opt/freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0-full/subjects/bert/mri/T1.mgz
T1.mgz
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from
/space/opt/freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0-full/subjects/bert/mri/T1.mgz...
--
ERROR: Invalid FreeSurfer license key found in license file
/space/opt/freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0-full/.license
--

*bugr*

FREESURFER_HOME:
/space/opt/freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0-full
Build stamp: freesurfer-Linux-centos4_x86_64-stable-pub-v5.3.0
RedHat release: Red Hat Enterprise Linux Server release 5.9 (Tikanga)
Kernel info: Linux 2.6.18-308.4.1.el5 x86_64

*cat $FREESURFER_HOME/.license*

ppo...@mail.rockefeller.edu
9148
 *C7cx5HQ1V7ws

(This is the same license we use successfully with v4.5 and v5.1)

Thanks!  (Also, please advise and accept my apologies if I'm using the list
wrong -- just getting started here.)

best,
stephen

*stephen v. shepherd   phd*
The Rockefeller University / 1230 York Avenue / New York NY 10065-6307 USA
// 212.327.7620
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Re: [Freesurfer] .license error

[Bruce Fischl]

Hi Nooshin

you should post this type of question to the list so others can answer. Are 
you sure that the file /Users/nzadeh/freesurfer/.license exists?

thanks
Bruce




On Tue, 1 Nov 2011, Zadeh, Nooshin N. wrote:


 Hi and Good afternoon

 I have downloaded the FS and in next steps to set it up, I got the license 
 and made a file and copied that license and saved on the 
 /Users/nzadeh/freesurfer named license. but when I start reconning one 
 subject I received the following error message. When I changed the name of 
 license file to .license it says that file would be hidden. After that, 
 with reconning the subject again, I received same error message. With running 
 other FS commands, I get the same error message. Can you please guide me how 
 can I install FS properly and where is my mistake? I appreciate your time.


 ERROR: FreeSurfer license file /Users/nzadeh/freesurfer/.license not found.
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.

 Thanks
 Nooshin



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[Freesurfer] license error

[Pom Sailasuta]

Hello,

I just installed freesurfer on my new Fedora 14 desktop following the
instruction from the
website. Howver when testing for installation, there are errors as follows:

[root@pom-PC stable5]# tkmedit bert orig.mgz
--
ERROR: Invalid FreeSurfer license key found in license file
/usr/local/freesurfer/stable5/.license
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.
--

Cheking .license file , there ia no blank lines at the beginning or end of
file

[root@pom-PC stable5]# more .license
#---CUT HERE---
pom4...@gmail.com
10301
 *CckOVij887CA
#---CUT HERE---
[root@pom-PC stable5]# pwd

Also similar error for tksurfer as well but qdec started o.k.

Also, according to the instruction freesurfer should be installed in
/usr/local/freesurefer directory
but SetUpFreeSurfer.csh call for freesurfer/stable5 directory.
So I created stable5 dir and move every file up from /usr/loca/freesurfer to
/usr/loca/freesufer/stable5.

thanks for the help
-- 
Pom
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Re: [Freesurfer] license error

[Bruce Fischl]

Hi Pom

ry removing the lines that say:

#---CUT HERE---

cheers
Bruce

On Thu, 10 Feb 2011, Pom Sailasuta 
wrote:

 Hello,

 I just installed freesurfer on my new Fedora 14 desktop following the
 instruction from the
 website. Howver when testing for installation, there are errors as follows:

 [root@pom-PC stable5]# tkmedit bert orig.mgz
 --
 ERROR: Invalid FreeSurfer license key found in license file
 /usr/local/freesurfer/stable5/.license
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.
 --

 Cheking .license file , there ia no blank lines at the beginning or end of
 file

 [root@pom-PC stable5]# more .license
 #---CUT HERE---
 pom4...@gmail.com
 10301
 *CckOVij887CA
 #---CUT HERE---
 [root@pom-PC stable5]# pwd

 Also similar error for tksurfer as well but qdec started o.k.

 Also, according to the instruction freesurfer should be installed in
 /usr/local/freesurefer directory
 but SetUpFreeSurfer.csh call for freesurfer/stable5 directory.
 So I created stable5 dir and move every file up from /usr/loca/freesurfer to
 /usr/loca/freesufer/stable5.

 thanks for the help

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