Hi Lars,
it looks like no input subjects are defined.
Bruce
On Wed, 27 Jun 2007, Lars M.
Rimol wrote:
Hi,
Trying to run make_average_subject but getting an error message. Any idea
what may be wrong?
Thank you!
Lars M. Rimol
make_average_surface --fsgd
/space/emc1/3/data/TOP/Analysis_lmr/TOPtest.fsgdf --out
/space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest
$Id: make_average_surface,v 1.27.2.2 2006/06/09 15:46:28 nicks Exp $
Wed Jun 27 18:06:43 PDT 2007
/space/emc1/3/data/TOP/Analysis_lmr
setenv SUBJECTS_DIR /space/emc1/3/data/TOP/Containers
output sdir is /space/emc1/3/data/TOP/Containers
uid=7266(lmr) gid=7266(lmr) groups=7266(lmr),7450(topproj)
context=user_u:system_r:unconfined_t
make_average_surface
input subjects:
output subject: /space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest
mri_add_xform_to_header -c auto
/space/emc1/3/data/TOP/Containers//space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest/mri/mni305.cor.mgz
/space/emc1/3/data/TOP/Containers//space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest/mri/mni305.cor.mgz
INFO: extension is mgz
[EMAIL PROTECTED] Making rh annotation -
Wed Jun 27 18:06:47 PDT 2007
mris_ca_label -ml-annot rh.curvature.buckner40.filled.desikan_killiany.gcs 7
label/rh.aparc.annot
/space/emc1/3/data/TOP/Containers/space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest
ML Label: rh.curvature.buckner40.filled.desikan_killiany.gcs 7
label/rh.aparc.annot
Reading icosahedron
/space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R304/lib/bem/ic7.tri
Reading gcsa from
/space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R304/average/rh.curvature.buckner40.filled.desikan_killiany.gcs
reading color table from GCSA file
average std = 35.0 0.3 using min determinant for regularization = 0.011
0 singular and 829 ill-conditioned covariance matrices regularized
Building most likely labels
Filtering labels
2 filter iterations complete (2 requested, 376 changed)
writing colortable into annotation file...
mris_ca_label -ml-annot rh.atlas2005_simple.gcs 7
label/rh.aparc.a2005s.annot
/space/emc1/3/data/TOP/Containers/space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest
ML Label: rh.atlas2005_simple.gcs 7 label/rh.aparc.a2005s.annot
Reading icosahedron
/space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R304/lib/bem/ic7.tri
Reading gcsa from
/space/monkeys/1/pubsw/packages/freesurfer/RH4-x86_64-R304/average/rh.atlas2005_simple.gcs
reading color table from GCSA file
average std = 1.0 0.2 using min determinant for regularization = 0.000
0 singular and 827 ill-conditioned covariance matrices regularized
Building most likely labels
Filtering labels
2 filter iterations complete (2 requested, 1935 changed)
writing colortable into annotation file...
[EMAIL PROTECTED] Making average rh.orig surface -
Wed Jun 27 18:07:06 PDT 2007
/space/emc1/3/data/TOP/Containers/space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest
mris_make_average_surface -i 7 -o orig -sdir-out
/space/emc1/3/data/TOP/Containers rh orig_avg
sphere.reg/space/emc1/3/data/TOP/Analysis_lmr/average_TOPtest
reading vertex positions from orig...
mris_make_average_surface [options] hemi outsurfname cansurfname outsubject
subj1 subj2 subj3 ...
Run with -help for more info
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