Re: [Freesurfer] mkanalysis-sess stimulusdelay parameter

2016-04-19 Thread Douglas N Greve
That was set assuming that the data have been slice-time corrected to 
the middle of the TR.

On 04/19/2016 02:31 PM, Joseph Dien wrote:
> I’m taking a look at the effects of stimulus delay settings in one of 
> my datasets so I was surprised to notice that the default setting 
> of mkanalysis-sess is a delay of -TR/2 seconds.  What is the reasoning 
> for this?  If, as I expect, it was just empirically found that it 
> worked better than without, my question is whether this decision was 
> made on the basis of all the event-related options or just some subset 
> of them?  I’m worried that this might be an optimization that isn’t 
> appropriate for my particular parameter choices (FS 5.3, spmhrf0). 
>  Any comments would be appreciated.
>
> Cheers!
>
> Joe
>
>
> 
>
> Joseph Dien, PhD
> Senior Research Scientist
> Maryland Neuroimaging Center
> University of Maryland, College Park
> http://joedien.com
>
>
>
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> Freesurfer mailing list
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[Freesurfer] mkanalysis-sess stimulusdelay parameter

2016-04-19 Thread Joseph Dien
I’m taking a look at the effects of stimulus delay settings in one of my 
datasets so I was surprised to notice that the default setting of 
mkanalysis-sess is a delay of -TR/2 seconds.  What is the reasoning for this?  
If, as I expect, it was just empirically found that it worked better than 
without, my question is whether this decision was made on the basis of all the 
event-related options or just some subset of them?  I’m worried that this might 
be an optimization that isn’t appropriate for my particular parameter choices 
(FS 5.3, spmhrf0).  Any comments would be appreciated.

Cheers!

Joe




Joseph Dien, PhD
Senior Research Scientist
Maryland Neuroimaging Center
University of Maryland, College Park
http://joedien.com

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