Hi, I used mri_watershed to get volume segmenstation with -LABEL option.
mri_watershed -atlas -LABEL $SUBJECTS_DIR/test/mri/T1.mgz $SUBJECTS_DIR/test/tmp/ What coordinate system is used for the segmented volume ? The coordinate seems a lot different from that of the surface extraction with SRAS. Is RAS coordinate used for the volume segmentation? Is there a way to transform the segmented volume to SRAS ? Thanks, Seok -- Seok Lew, Ph.D. Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital Building 149, 13th Street, Mailcode 149-2301 Charlestown, MA 02129-2060 USA e-mail s...@nmr.mgh.harvard.edu FAX 617 726 7422 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
