[Freesurfer] mri_ca_train UCHAR/FLOAT
Hello freesurfers, I am currently attempting to run mri_ca_train to create a .GCA atlas based of off a series of subjects. I am receiving the following error: *** processing subject CMH-3074, 1 of 10... mri_ca_train: segmentation file /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-3074/mri/seg_edited.mgz is not type UCHAR or FLOAT Is there an easy way to convert the file to UCHAR or FLOAT in FreeSurfer? Will this change the data/labels? Thank you! -MP ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] mri_ca_train UCHAR/FLOAT
yes, mri_convert -odt float will do it. What format is it in? On Wed, 7 Aug 2013, Mark Plantz wrote: Hello freesurfers, I am currently attempting to run mri_ca_train to create a .GCA atlas based of off a series of subjects. I am receiving the following error: *** processing subject CMH-3074, 1 of 10... mri_ca_train: segmentation file /Volumes/Wong_Lab/LabMRIData/FreeSurfer/CMH-3074/mri/seg_edited.mgz is not type UCHAR or FLOAT Is there an easy way to convert the file to UCHAR or FLOAT in FreeSurfer? Will this change the data/labels? Thank you! -MP ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] mri_ca_train UCHAR/FLOAT
It is currently in INT format. Thank you. MP On Wed, Aug 7, 2013 at 11:51 AM, Bruce Fischl fis...@nmr.mgh.harvard.eduwrote: yes, mri_convert -odt float will do it. What format is it in? On Wed, 7 Aug 2013, Mark Plantz wrote: Hello freesurfers, I am currently attempting to run mri_ca_train to create a .GCA atlas based of off a series of subjects. I am receiving the following error: *** processing subject CMH-3074, 1 of 10... mri_ca_train: segmentation file /Volumes/Wong_Lab/LabMRIData/** FreeSurfer/CMH-3074/mri/seg_**edited.mgz is not type UCHAR or FLOAT Is there an easy way to convert the file to UCHAR or FLOAT in FreeSurfer? Will this change the data/labels? Thank you! -MP The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
