[Freesurfer] pathstats.byvoxel.txt
Hi Anastasia, I noticed that my pathstats.byvoxel.txt files are missing the last four values (AD_Avg RD_Avg MD_Avg FA_Avg) even though I'm certain I ran trac-all -path -c dmrircFile correctly. Do you have any idea why this might be? e.g. a configuration file change? Thank you! -- Susie Kuo Mediocrity knows nothing higher than itself, but talent instantly recognizes genius. - Sir Arthur Conan Doyle,* Sherlock Holmes- Valley of Fear* ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] pathstats.byvoxel.txt
Hi Anastasia, I believe the issue I had with the pathstats.byvoxel.txt not displaying the last four values (AD_Avg RD_Avg MD_Avg FA_Avg ) is owing to the fact that trac-all was run with FREESURFER 5.1. I believe that FREESURFER 5.2 may be needed to generate path.pd.trk, and from that, the above values are derived. Is this correct? Thank you again, and have a good day! -- Susie Kuo Mediocrity knows nothing higher than itself, but talent instantly recognizes genius. - Sir Arthur Conan Doyle,* Sherlock Holmes- Valley of Fear* ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] pathstats.byvoxel.txt
That is exactly right! Those were added after 5.1. On Mon, 15 Jul 2013, Susan Kuo wrote: Hi Anastasia, I believe the issue I had with the pathstats.byvoxel.txt not displaying the last four values (AD_Avg RD_Avg MD_Avg FA_Avg ) is owing to the fact that trac-all was run with FREESURFER 5.1. I believe that FREESURFER 5.2 may be needed to generate path.pd.trk, and from that, the above values are derived. Is this correct? Thank you again, and have a good day! -- Susie Kuo Mediocrity knows nothing higher than itself, but talent instantly recognizes genius. - Sir Arthur Conan Doyle, Sherlock Holmes- Valley of Fear ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] pathstats.byvoxel.txt
I should add that there several other reasons to be using the newer version of tracula (from 5.2 or 5.3), including speed and other improvements listed here: http://surfer.nmr.mgh.harvard.edu/fswiki/Tracula#Updates Also note that using 5.2 or 5.3 won't make a difference in terms of the tracula code, but for recon-all purposes you should not be using 5.2. On Mon, 15 Jul 2013, Susan Kuo wrote: Hi Anastasia, I believe the issue I had with the pathstats.byvoxel.txt not displaying the last four values (AD_Avg RD_Avg MD_Avg FA_Avg ) is owing to the fact that trac-all was run with FREESURFER 5.1. I believe that FREESURFER 5.2 may be needed to generate path.pd.trk, and from that, the above values are derived. Is this correct? Thank you again, and have a good day! -- Susie Kuo Mediocrity knows nothing higher than itself, but talent instantly recognizes genius. - Sir Arthur Conan Doyle, Sherlock Holmes- Valley of Fear ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
