Re: [Freesurfer] qdec error message
Hi Nick I run Qdec 1.2 and all cases have been processed with freesurfer-Linux-centos4_x86_64-stable-pub-v4.2.0 Olivier On 25/05/2011, at 21:18, Nick Schmansky wrote: > what version of freesurfer does this happen with? > > n. > On Wed, 2011-05-25 at 14:17 +1000, Olivier Piguet wrote: >> Good afternoon, >> >> When running qdec, I receive the following error message: >> >> Writing to >> /Volumes/workingdata/FTD/T1/subjects/qdec/Untitled/contrasts.sig.mgh >> reading group avg surface area 822 cm^2 from file >> ERROR: could not find volume >> /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/../mri/orig. Does it >> exist? >> Reading in average area >> /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/lh.white.avg.area.mgh >> reading group avg surface area 1041 cm^2 from file >> ERROR: could not find volume >> /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/../mri/orig. Does it >> exist? >> Reading in average area >> /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/lh.pial.avg.area.mgh >> reading group avg surface area 822 cm^2 from file >> ERROR: could not find volume >> /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/../mri/orig. Does it >> exist? >> >> I have run all subjects with qcache and I am using fsaverage. I have checked >> the files in the fsaverage folder. Although the file orig. does not exist, >> there is a file called orig.mgz in the mri folder. I have tried to rename >> this file (i.e., removing the 'mgz' part) but this did not remove the error. >> >> Any suggestion would be appreciated. >> >> Thanks >> >> Olivier Piguet >> Neuroscience Research Australia >> Sydney NSW, Australia >> >> >> >> >> >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] qdec error message
what version of freesurfer does this happen with? n. On Wed, 2011-05-25 at 14:17 +1000, Olivier Piguet wrote: > Good afternoon, > > When running qdec, I receive the following error message: > > Writing to > /Volumes/workingdata/FTD/T1/subjects/qdec/Untitled/contrasts.sig.mgh > reading group avg surface area 822 cm^2 from file > ERROR: could not find volume > /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/../mri/orig. Does it > exist? > Reading in average area > /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/lh.white.avg.area.mgh > reading group avg surface area 1041 cm^2 from file > ERROR: could not find volume > /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/../mri/orig. Does it > exist? > Reading in average area > /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/lh.pial.avg.area.mgh > reading group avg surface area 822 cm^2 from file > ERROR: could not find volume > /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/../mri/orig. Does it > exist? > > I have run all subjects with qcache and I am using fsaverage. I have checked > the files in the fsaverage folder. Although the file orig. does not exist, > there is a file called orig.mgz in the mri folder. I have tried to rename > this file (i.e., removing the 'mgz' part) but this did not remove the error. > > Any suggestion would be appreciated. > > Thanks > > Olivier Piguet > Neuroscience Research Australia > Sydney NSW, Australia > > > > > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] qdec error message
Good afternoon, When running qdec, I receive the following error message: Writing to /Volumes/workingdata/FTD/T1/subjects/qdec/Untitled/contrasts.sig.mgh reading group avg surface area 822 cm^2 from file ERROR: could not find volume /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/../mri/orig. Does it exist? Reading in average area /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/lh.white.avg.area.mgh reading group avg surface area 1041 cm^2 from file ERROR: could not find volume /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/../mri/orig. Does it exist? Reading in average area /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/lh.pial.avg.area.mgh reading group avg surface area 822 cm^2 from file ERROR: could not find volume /Volumes/workingdata/FTD/T1/subjects/fsaverage/surf/../mri/orig. Does it exist? I have run all subjects with qcache and I am using fsaverage. I have checked the files in the fsaverage folder. Although the file orig. does not exist, there is a file called orig.mgz in the mri folder. I have tried to rename this file (i.e., removing the 'mgz' part) but this did not remove the error. Any suggestion would be appreciated. Thanks Olivier Piguet Neuroscience Research Australia Sydney NSW, Australia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Qdec error message
Julia, If you haven't already tried this, can you make sure that your display is set to use 'millions' of colors (thats the Mac OS's way of setting 24bit color). If that doesnt matter, you can try using the newest freesurfer, v4.1.0, which is built against vtk v5.2, which is newer than what is in freesurfer 4.0.5. Nick On Wed, 2008-11-26 at 14:59 +, Julia Altenburg wrote: > Hey all. > > I got the same error message as Jenifer and Dorit described earlier. > > [lips-computer-2:~/Desktop/freesurfer_Julia] Preissle% qdec > ERROR: > In > /usr/pubsw/packages/vtk/5.0.4/src/VTK/Rendering/vtkXOpenGLRenderWindow.cxx, > line 219 > vtkXOpenGLRenderWindow (0x4921ff0): Could not find a decent visual > > I get the message three times, but it's possible to open the qdec > table after that. I've attached a screenshot of what the Display looks > like. > Is there anything I can do to solve this problem? I've tried the > advices you've given previously, but the message ist still shown. > > I'm working with > FREESURFER_HOME: /Applications/freesurfer > > Build stamp: freesurfer-Darwin-tiger-i686-stable-pub-v4.0.5 > > Kernel info: Darwin 8.11.1 i386 > > > Thanks in advance > Cheers Julia > > > > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
