That's correct.
On Thu, 14 Mar 2013, Mehul Sampat wrote:
Hi Folks,I was looking at the autorecon2-cp, autorecon-pial and autorecon-wm
flags in recon-all help and also here
http://surfer.nmr.mgh.harvard.edu/fswiki/OtherUsefulFlags
My interpretation is when I use autorecon-pial, I only need the command:
recon-all --autorecon-pial -s subject
While for autorecon2-cp and autorecon2-wm we need the command:
recon-all -autorecon2-cp -autorecon3 -s subject
recon-all -autorecon2-wm -autorecon3 -s subject
since for autorecon2-cp and autorecon2-wm only a subset of stages are
processed as described in recon-all help:
-autorecon2-cp : process stages 12-23 (uses -f w/ mri_normalize, -keep w/
mri_seg)
-autorecon2-wm : process stages 15-23
Thanks
Mehul
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