Re: [Freesurfer] Question about volume matrix in hippocampus

2021-04-22 Thread Iglesias Gonzalez, Juan E.
quantifyHAsubregions.sh  hippoSf  T1 results.txt   
/home/weishao/At_risk

Cheers,

/E

Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com



From:  on behalf of Wei Shao 

Reply-To: Freesurfer support list 
Date: Thursday, April 22, 2021 at 17:12
To: Freesurfer support list 
Subject: Re: [Freesurfer] Question about volume matrix in hippocampus


External Email - Use Caution
Hi. Dear Eugenio

Thanks for your reply, could you be more specific? I have tried many times with 
this command but with the same problem happened.

For example, I use the one subject

quantifyHAsubregions.sh hippoSf  T1-AVP6176  At_risk/volume

And the feedback

Gathering results from subjects in:
   /home/weishao/At_risk
Using the prefix name:
   hippoSf
Using the suffix name:
   T1-AVP6176
And writing them to:
   home/weishao/At_risk/volume

However, there is no result text file in the output directory.

[weishao@gra-login1 ~]$ cd At_risk/volume/
[weishao@gra-login1 volume]$ ls -ltr
total 0

The attachment is the original script of quantifyHAsubregions.sh

Best,
Wei

On Thu, Apr 22, 2021 at 3:21 PM Iglesias Gonzalez, Juan E. 
mailto:jiglesiasgonza...@mgh.harvard.edu>> 
wrote:
Dear Wei,
The syntax of the command is:
quantifyHAsubregions.sh hippoSf -  




Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" 
claiming to be 
http://www.jeiglesias.com<http://secure-web.cisco.com/1JMQZFodc2ZeKRIdC2wNQ0ofo-HaHdAORal7oOrAUz7-tO2Db6jV2MPQlWKnNLpvTrElx5paBPy1YOLk30wxeHcCllCk3q5WOD4BnvbPHdgEhA6cvcruA5SVQ2qDFypia0sqAoSxitVKwVD5WPcVZbZ_1EaSdxIgIcxRhGawHn0jEe4JWpIl7gqXA1LRXVl43wYcE-ht-QPEKXwmx4MdvE5vE8Rkm_nXchVsr6tvSvnaW1Z8RtnHlfKKEFGQFHXemMfXSGkYwZucCJJ8aVMipyw/http%3A%2F%2Fwww.jeiglesias.com>



From: 
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
 on behalf of Wei Shao 
mailto:ws...@research.baycrest.org>>
Reply-To: Freesurfer support list 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Thursday, April 22, 2021 at 15:10
To: Freesurfer support list 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: Re: [Freesurfer] Question about volume matrix in hippocampus


External Email - Use Caution
Hi, Eugenio

Thanks for your kind reply. I have tried this command with a dataset and it 
wasn't function.

For example, Here is my script

#!/bin/bash

module load freesurfer/7.1.0
source $EBROOTFREESURFER/FreeSurferEnv.sh
export SUBJECTS_DIR=/home/weishao/At_risk

quantifyHAsubregions.sh hippoSf sub-AVP8580 sub-AVP6176 sub-BAY10224 
/home/weishao/At_risk
And there is the feedback

Gathering results from subjects in:
   sub-BAY10224
Using the prefix name:
   hippoSf
Using the suffix name:
   sub-AVP8580
And writing them to:
   sub-AVP6176
/project/6019291/shared/software/2017/Core/freesurfer/7.1.0/bin/quantifyHAsubregions.sh:
 line 8: cd: sub-BAY10224: No such file or directory
failed to do cd sub-BAY10224

I also tried this with one subject,

And I don't find the text file at /home/weishao/At_risk,  I also tried this 
with one subject, couldn't find the text file neither.

Would you mind tell me where I did wrong? Thanks

Best,
Wei

On Wed, Apr 21, 2021 at 5:26 PM Iglesias Gonzalez, Juan E. 
mailto:jiglesiasgonza...@mgh.harvard.edu>> 
wrote:
Dear Wei,
All the volume measurements use the underlying probabilities with the maximum 
level of granularity.
Kind regards,
Eugenio


Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" 
claiming to be 
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From: 
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
 on behalf of Wei Shao 
mailto:ws...@research.baycrest.org>>
Reply-To: Freesurfer support list 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Wednesday, April 21, 2021 at 17:20
To: Freesurfer support list 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] Question about volume matrix in hippocampus


External Email - Use Caution
Hi, Freesurfer experts.

I have used  "quantifyHAsubregions.sh hippoSf" to gather the volume information 
from the hippocampus. A quick question about the volume matrix, would you tell 
me which label system  ("HBT" "FS60" or "CA") this code used to extract the 
volume information? or there is no difference? Thanks

Best,
Wei
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Re: [Freesurfer] Question about volume matrix in hippocampus

2021-04-22 Thread Wei Shao
External Email - Use Caution

Hi. Dear Eugenio

Thanks for your reply, could you be more specific? I have tried many times
with this command but with the same problem happened.

For example, I use the one subject

quantifyHAsubregions.sh hippoSf  T1-AVP6176  At_risk/volume

And the feedback

Gathering results from subjects in:
   /home/weishao/At_risk
Using the prefix name:
   hippoSf
Using the suffix name:
   T1-AVP6176
And writing them to:
   home/weishao/At_risk/volume

However, there is no result text file in the output directory.

[weishao@gra-login1 ~]$ cd At_risk/volume/
[weishao@gra-login1 volume]$ ls -ltr
total 0

The attachment is the original script of quantifyHAsubregions.sh

Best,
Wei

On Thu, Apr 22, 2021 at 3:21 PM Iglesias Gonzalez, Juan E. <
jiglesiasgonza...@mgh.harvard.edu> wrote:

> Dear Wei,
>
> The syntax of the command is:
>
> quantifyHAsubregions.sh hippoSf - 
> 
>
>
>
>
>
>
>
> Juan Eugenio Iglesias
>
> Senior research fellow
>
> CMIC (UCL), MGH (HMS) and CSAIL (MIT)
>
> http://secure-web.cisco.com/1JMQZFodc2ZeKRIdC2wNQ0ofo-HaHdAORal7oOrAUz7-tO2Db6jV2MPQlWKnNLpvTrElx5paBPy1YOLk30wxeHcCllCk3q5WOD4BnvbPHdgEhA6cvcruA5SVQ2qDFypia0sqAoSxitVKwVD5WPcVZbZ_1EaSdxIgIcxRhGawHn0jEe4JWpIl7gqXA1LRXVl43wYcE-ht-QPEKXwmx4MdvE5vE8Rkm_nXchVsr6tvSvnaW1Z8RtnHlfKKEFGQFHXemMfXSGkYwZucCJJ8aVMipyw/http%3A%2F%2Fwww.jeiglesias.com
>
>
>
>
>
>
>
> *From: * on behalf of Wei Shao <
> ws...@research.baycrest.org>
> *Reply-To: *Freesurfer support list 
> *Date: *Thursday, April 22, 2021 at 15:10
> *To: *Freesurfer support list 
> *Subject: *Re: [Freesurfer] Question about volume matrix in hippocampus
>
>
>
> *External Email - Use Caution*
>
> Hi, Eugenio
>
>
>
> Thanks for your kind reply. I have tried this command with a dataset and
> it wasn't function.
>
>
>
> For example, Here is my script
>
>
>
> #!/bin/bash
>
> module load freesurfer/7.1.0
> source $EBROOTFREESURFER/FreeSurferEnv.sh
> export SUBJECTS_DIR=/home/weishao/At_risk
>
> quantifyHAsubregions.sh hippoSf sub-AVP8580 sub-AVP6176 sub-BAY10224
> /home/weishao/At_risk
>
> *And there is the feedback *
>
>
>
> Gathering results from subjects in:
>sub-BAY10224
> Using the prefix name:
>hippoSf
> Using the suffix name:
>sub-AVP8580
> And writing them to:
>sub-AVP6176
> /project/6019291/shared/software/2017/Core/freesurfer/7.1.0/bin/quantifyHAsubregions.sh:
> line 8: cd: sub-BAY10224: No such file or directory
> failed to do cd sub-BAY10224
>
>
>
> I also tried this with one subject,
>
>
>
> And I don't find the text file at /home/weishao/At_risk,  I also tried
> this with one subject, couldn't find the text file neither.
>
>
>
> Would you mind tell me where I did wrong? Thanks
>
>
>
> Best,
>
> Wei
>
>
>
> On Wed, Apr 21, 2021 at 5:26 PM Iglesias Gonzalez, Juan E. <
> jiglesiasgonza...@mgh.harvard.edu> wrote:
>
> Dear Wei,
>
> All the volume measurements use the underlying probabilities with the
> maximum level of granularity.
>
> Kind regards,
>
> Eugenio
>
>
>
>
>
> Juan Eugenio Iglesias
>
> Senior research fellow
>
> CMIC (UCL), MGH (HMS) and CSAIL (MIT)
>
> *MailScanner has detected a possible fraud attempt from
> "secure-web.cisco.com" claiming to be* 
> http://secure-web.cisco.com/1JMQZFodc2ZeKRIdC2wNQ0ofo-HaHdAORal7oOrAUz7-tO2Db6jV2MPQlWKnNLpvTrElx5paBPy1YOLk30wxeHcCllCk3q5WOD4BnvbPHdgEhA6cvcruA5SVQ2qDFypia0sqAoSxitVKwVD5WPcVZbZ_1EaSdxIgIcxRhGawHn0jEe4JWpIl7gqXA1LRXVl43wYcE-ht-QPEKXwmx4MdvE5vE8Rkm_nXchVsr6tvSvnaW1Z8RtnHlfKKEFGQFHXemMfXSGkYwZucCJJ8aVMipyw/http%3A%2F%2Fwww.jeiglesias.com
> <http://secure-web.cisco.com/1bK9Xmm7cNRBWH73XeUE3ROyYVFC0VU8bFAuK6d5WSElLPFE2zDlSEpKsgjrFb1ckAVriuarMf8sfizjd-Jxqz0Z_7NkO1ndGSwPXmMj7979KyP1iHCiaTdPkN869_aFAGbUN4ZLUsqbJjwIXhzhty2QQp4GqBy1FXa5ws4z6kQxH4k-DGASyP0cXn1OYAvtGNGD1ijRcivM59q-wKnNALtSFPWo50p9qmikNWzoeYfPt9n6qvFUzRNqe6IpfhpzgtArpyYdRc_Yiz0T6Kfy8xg/http%3A%2F%2Fwww.jeiglesias.com>
>
>
>
>
>
>
>
>
> *From: * on behalf of Wei Shao <
> ws...@research.baycrest.org>
> *Reply-To: *Freesurfer support list 
> *Date: *Wednesday, April 21, 2021 at 17:20
> *To: *Freesurfer support list 
> *Subject: *[Freesurfer] Question about volume matrix in hippocampus
>
>
>
> *External Email - Use Caution*
>
> Hi, Freesurfer experts.
>
>
>
> I have used  "quantifyHAsubregions.sh hippoSf" to gather the volume
> information from the hippocampus

Re: [Freesurfer] Question about volume matrix in hippocampus

2021-04-22 Thread Iglesias Gonzalez, Juan E.
Dear Wei,
The syntax of the command is:
quantifyHAsubregions.sh hippoSf -  




Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com



From:  on behalf of Wei Shao 

Reply-To: Freesurfer support list 
Date: Thursday, April 22, 2021 at 15:10
To: Freesurfer support list 
Subject: Re: [Freesurfer] Question about volume matrix in hippocampus


External Email - Use Caution
Hi, Eugenio

Thanks for your kind reply. I have tried this command with a dataset and it 
wasn't function.

For example, Here is my script

#!/bin/bash

module load freesurfer/7.1.0
source $EBROOTFREESURFER/FreeSurferEnv.sh
export SUBJECTS_DIR=/home/weishao/At_risk

quantifyHAsubregions.sh hippoSf sub-AVP8580 sub-AVP6176 sub-BAY10224 
/home/weishao/At_risk
And there is the feedback

Gathering results from subjects in:
   sub-BAY10224
Using the prefix name:
   hippoSf
Using the suffix name:
   sub-AVP8580
And writing them to:
   sub-AVP6176
/project/6019291/shared/software/2017/Core/freesurfer/7.1.0/bin/quantifyHAsubregions.sh:
 line 8: cd: sub-BAY10224: No such file or directory
failed to do cd sub-BAY10224

I also tried this with one subject,

And I don't find the text file at /home/weishao/At_risk,  I also tried this 
with one subject, couldn't find the text file neither.

Would you mind tell me where I did wrong? Thanks

Best,
Wei

On Wed, Apr 21, 2021 at 5:26 PM Iglesias Gonzalez, Juan E. 
mailto:jiglesiasgonza...@mgh.harvard.edu>> 
wrote:
Dear Wei,
All the volume measurements use the underlying probabilities with the maximum 
level of granularity.
Kind regards,
Eugenio


Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" 
claiming to be 
http://www.jeiglesias.com<http://secure-web.cisco.com/1bK9Xmm7cNRBWH73XeUE3ROyYVFC0VU8bFAuK6d5WSElLPFE2zDlSEpKsgjrFb1ckAVriuarMf8sfizjd-Jxqz0Z_7NkO1ndGSwPXmMj7979KyP1iHCiaTdPkN869_aFAGbUN4ZLUsqbJjwIXhzhty2QQp4GqBy1FXa5ws4z6kQxH4k-DGASyP0cXn1OYAvtGNGD1ijRcivM59q-wKnNALtSFPWo50p9qmikNWzoeYfPt9n6qvFUzRNqe6IpfhpzgtArpyYdRc_Yiz0T6Kfy8xg/http%3A%2F%2Fwww.jeiglesias.com>



From: 
mailto:freesurfer-boun...@nmr.mgh.harvard.edu>>
 on behalf of Wei Shao 
mailto:ws...@research.baycrest.org>>
Reply-To: Freesurfer support list 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Date: Wednesday, April 21, 2021 at 17:20
To: Freesurfer support list 
mailto:freesurfer@nmr.mgh.harvard.edu>>
Subject: [Freesurfer] Question about volume matrix in hippocampus


External Email - Use Caution
Hi, Freesurfer experts.

I have used  "quantifyHAsubregions.sh hippoSf" to gather the volume information 
from the hippocampus. A quick question about the volume matrix, would you tell 
me which label system  ("HBT" "FS60" or "CA") this code used to extract the 
volume information? or there is no difference? Thanks

Best,
Wei
___
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Re: [Freesurfer] Question about volume matrix in hippocampus

2021-04-22 Thread Wei Shao
External Email - Use Caution

Hi, Eugenio

Thanks for your kind reply. I have tried this command with a dataset and it
wasn't function.

For example, Here is my script

#!/bin/bash

module load freesurfer/7.1.0
source $EBROOTFREESURFER/FreeSurferEnv.sh
export SUBJECTS_DIR=/home/weishao/At_risk

quantifyHAsubregions.sh hippoSf sub-AVP8580 sub-AVP6176 sub-BAY10224
/home/weishao/At_risk

*And there is the feedback *

Gathering results from subjects in:
   sub-BAY10224
Using the prefix name:
   hippoSf
Using the suffix name:
   sub-AVP8580
And writing them to:
   sub-AVP6176
/project/6019291/shared/software/2017/Core/freesurfer/7.1.0/bin/quantifyHAsubregions.sh:
line 8: cd: sub-BAY10224: No such file or directory
failed to do cd sub-BAY10224

I also tried this with one subject,

And I don't find the text file at /home/weishao/At_risk,  I also tried this
with one subject, couldn't find the text file neither.

Would you mind tell me where I did wrong? Thanks

Best,
Wei

On Wed, Apr 21, 2021 at 5:26 PM Iglesias Gonzalez, Juan E. <
jiglesiasgonza...@mgh.harvard.edu> wrote:

> Dear Wei,
>
> All the volume measurements use the underlying probabilities with the
> maximum level of granularity.
>
> Kind regards,
>
> Eugenio
>
>
>
>
>
> Juan Eugenio Iglesias
>
> Senior research fellow
>
> CMIC (UCL), MGH (HMS) and CSAIL (MIT)
>
> http://secure-web.cisco.com/1bK9Xmm7cNRBWH73XeUE3ROyYVFC0VU8bFAuK6d5WSElLPFE2zDlSEpKsgjrFb1ckAVriuarMf8sfizjd-Jxqz0Z_7NkO1ndGSwPXmMj7979KyP1iHCiaTdPkN869_aFAGbUN4ZLUsqbJjwIXhzhty2QQp4GqBy1FXa5ws4z6kQxH4k-DGASyP0cXn1OYAvtGNGD1ijRcivM59q-wKnNALtSFPWo50p9qmikNWzoeYfPt9n6qvFUzRNqe6IpfhpzgtArpyYdRc_Yiz0T6Kfy8xg/http%3A%2F%2Fwww.jeiglesias.com
>
>
>
>
>
>
>
> *From: * on behalf of Wei Shao <
> ws...@research.baycrest.org>
> *Reply-To: *Freesurfer support list 
> *Date: *Wednesday, April 21, 2021 at 17:20
> *To: *Freesurfer support list 
> *Subject: *[Freesurfer] Question about volume matrix in hippocampus
>
>
>
> *External Email - Use Caution*
>
> Hi, Freesurfer experts.
>
>
>
> I have used  "quantifyHAsubregions.sh hippoSf" to gather the volume
> information from the hippocampus. A quick question about the volume matrix,
> would you tell me which label system  ("HBT" "FS60" or "CA") this code used
> to extract the volume information? or there is no difference? Thanks
>
>
>
> Best,
>
> Wei
> ___
> Freesurfer mailing list
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> risk and wish to continue to communicate over unencrypted e-mail.
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Re: [Freesurfer] Question about volume matrix in hippocampus

2021-04-21 Thread Iglesias Gonzalez, Juan E.
Dear Wei,
All the volume measurements use the underlying probabilities with the maximum 
level of granularity.
Kind regards,
Eugenio


Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com



From:  on behalf of Wei Shao 

Reply-To: Freesurfer support list 
Date: Wednesday, April 21, 2021 at 17:20
To: Freesurfer support list 
Subject: [Freesurfer] Question about volume matrix in hippocampus


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Hi, Freesurfer experts.

I have used  "quantifyHAsubregions.sh hippoSf" to gather the volume information 
from the hippocampus. A quick question about the volume matrix, would you tell 
me which label system  ("HBT" "FS60" or "CA") this code used to extract the 
volume information? or there is no difference? Thanks

Best,
Wei
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[Freesurfer] Question about volume matrix in hippocampus

2021-04-21 Thread Wei Shao
External Email - Use Caution

Hi, Freesurfer experts.

I have used  "quantifyHAsubregions.sh hippoSf" to gather the volume
information from the hippocampus. A quick question about the volume matrix,
would you tell me which label system  ("HBT" "FS60" or "CA") this code used
to extract the volume information? or there is no difference? Thanks

Best,
Wei
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Re: [Freesurfer] question about volume of the hippocampus

2016-07-07 Thread kjunji
Dear Douglas N Greve

Following your comments, I could open aseg.stats, and obtain the 
hippocampus volume.
Thank you for your grateful advise.

Yours sincerely,
Junji Komatsu



2016-07-08 02:50 に Douglas N Greve さんは書きました:
> aseg.stats is just a text file, so you can view it with any text viewer
> (eg, the unix more or less commands, vi, emacs)
> 
> On 07/07/2016 06:41 AM, kju...@med.kanazawa-u.ac.jp wrote:
>> Dear freesurfer developers.
>> 
>> I am working at department of neurology in university Hospital, Japan.
>> I am beginner of freesurfer, please forgive me to ask you a basic
>> question.
>> 
>> I want to measure the volume of the hippocampus in my patients.
>> I was able to segment the MRI successfully and display the image in
>> freeviewer.
>> However, I could not recognize the way to obtain the volume of the
>> hippocampus.
>> 
>> *I saw the "mail acheive"
>> (http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg14679.html),
>> however, I could not understand the way to look at the the aseg.stats.
>> 
>> Could you teach me the way for obtaining the volume of the 
>> hippocampus?
>> I and very looking forward to hearing from you.
>> 
>> Yours sincerely,
>> Junji Komatsu
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> 
>> 
> 
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
> 
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: 
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> 
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> it is
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> contains patient information, please contact the Partners Compliance 
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you 
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> properly
> dispose of the e-mail.
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Re: [Freesurfer] question about volume of the hippocampus

2016-07-07 Thread Douglas N Greve
aseg.stats is just a text file, so you can view it with any text viewer 
(eg, the unix more or less commands, vi, emacs)

On 07/07/2016 06:41 AM, kju...@med.kanazawa-u.ac.jp wrote:
> Dear freesurfer developers.
>
> I am working at department of neurology in university Hospital, Japan.
> I am beginner of freesurfer, please forgive me to ask you a basic
> question.
>
> I want to measure the volume of the hippocampus in my patients.
> I was able to segment the MRI successfully and display the image in
> freeviewer.
> However, I could not recognize the way to obtain the volume of the
> hippocampus.
>
> *I saw the "mail acheive"
> (http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg14679.html),
> however, I could not understand the way to look at the the aseg.stats.
>
> Could you teach me the way for obtaining the volume of the hippocampus?
> I and very looking forward to hearing from you.
>
> Yours sincerely,
> Junji Komatsu
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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but does not contain patient information, please contact the sender and properly
dispose of the e-mail.



[Freesurfer] question about volume of the hippocampus

2016-07-07 Thread kjunji
Dear freesurfer developers.

I am working at department of neurology in university Hospital, Japan.
I am beginner of freesurfer, please forgive me to ask you a basic 
question.

I want to measure the volume of the hippocampus in my patients.
I was able to segment the MRI successfully and display the image in 
freeviewer.
However, I could not recognize the way to obtain the volume of the 
hippocampus.

*I saw the "mail acheive" 
(http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg14679.html), 
however, I could not understand the way to look at the the aseg.stats.

Could you teach me the way for obtaining the volume of the hippocampus?
I and very looking forward to hearing from you.

Yours sincerely,
Junji Komatsu
___
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Freesurfer@nmr.mgh.harvard.edu
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.