Re: [Freesurfer] recon-all warnings

2016-06-23 Thread Z K
Yes they are just warning and can be ignored. The upcoming release of 
freesurfer v6 has addressed the deprecation issue.

-Zeke

On 06/23/2016 11:48 AM, Rockers, Elijah D. wrote:
> Hello,
>
> Doing a recon-all -all yields some deprecation warnings.
>
> defined(@array) is deprecated at
> /freesurfer/mni/bin/nu_estimate_np_and_em line 165.
>
> Use of ?PATTERN? without explicit operator is deprecated at
> /freesurfer/mni/bin/sharpen_volume line 153.
>
> I think my results should still be OK because it's a warning, but I just
> wanted to make sure.
>
> Thanks,
>
> Eli
>
> Houston Methodist. Leading Medicine.
>
> Ranked by U.S.News & World Report as one of America's "Best Hospitals" in 11 
> specialties. Named to FORTUNE® Magazine's "100 Best Companies to Work For®" 
> list 10 years in a row. Designated as a Magnet hospital for excellence in 
> nursing. Visit us at houstonmethodist.org. Follow us at 
> twitter.com/MethodistHosp and www.facebook.com/HoustonMethodist.
>
> ***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist 
> Hospital and/or its relevant affiliates and may contain restricted and 
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> review, use, distribution or disclosure by others is strictly prohibited. If 
> you are not the intended recipient (or authorized to receive for the 
> recipient), please contact the sender and delete all copies of the message. 
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>
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[Freesurfer] recon-all warnings

2016-06-23 Thread Rockers, Elijah D.
Hello,

Doing a recon-all -all yields some deprecation warnings.

defined(@array) is deprecated at 
/freesurfer/mni/bin/nu_estimate_np_and_em line 165.

Use of ?PATTERN? without explicit operator is deprecated at 
/freesurfer/mni/bin/sharpen_volume line 153.

I think my results should still be OK because it's a warning, but I just 
wanted to make sure.

Thanks,

Eli

Houston Methodist. Leading Medicine.

Ranked by U.S.News & World Report as one of America's "Best Hospitals" in 11 
specialties. Named to FORTUNE® Magazine's "100 Best Companies to Work For®" 
list 10 years in a row. Designated as a Magnet hospital for excellence in 
nursing. Visit us at houstonmethodist.org. Follow us at 
twitter.com/MethodistHosp and www.facebook.com/HoustonMethodist.

***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist 
Hospital and/or its relevant affiliates and may contain restricted and 
privileged material for the sole use of the intended recipient(s). Any review, 
use, distribution or disclosure by others is strictly prohibited. If you are 
not the intended recipient (or authorized to receive for the recipient), please 
contact the sender and delete all copies of the message. Thank you.

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.