'bugr'
is the command to type to gather most of the info we need to debug a
problem. the 'recon-all.log' file is the biggest help.
if you want to just try rerunning, then try:
recon-all -s -make all
Nick
On Mon, 2009-07-27 at 04:12 +0200, Michael Scheel wrote:
> Hi freesurfer-experts,
>
> I was running the recon-all script and did get some errors due to a
> missing vtk and x-windows libraries.
> The output that was created seems fine though, just some files are
> missing.
> I was wondering if there is way to rerun the analysis, but only the
> parts that exited with error?
>
> these programs exited with error
> mris_volmask
> mri_aparc2aseg (several times with different options)
> and a final mri_segstats
>
>
> Thanks, Michael
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