Re: [Freesurfer] slanted
Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] slanted
Will he be back today? Upload it in an e-mail? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 12:21 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] slanted
You can either upload it to our ftp server or use the email file drop system. See link below for details. https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange On Wed, 11 Jul 2012, Borzello, Mia wrote: Will he be back today? Upload it in an e-mail? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 12:21 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] slanted
Hi Mia, no, there are instructions on the wiki for uploading your data using either ftp or the filedrop. And no, I think it will be another couple of days Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Will he be back today? Upload it in an e-mail? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 12:21 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] slanted
i saw the instructions, but it doesn't give an e-mail specifically for that and ftp surfer.nmr.mgh.harvard.edu doesn't work. From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:24 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, no, there are instructions on the wiki for uploading your data using either ftp or the filedrop. And no, I think it will be another couple of days Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Will he be back today? Upload it in an e-mail? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 12:21 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] slanted
when you say ftp doesn't work, what do you mean? It works for me: ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu (132.183.202.158). 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php 220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:fischl): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp cd /space/incoming 250 Directory successfully changed. ftp ls 227 Entering Passive Mode (132,183,202,158,147,239) 150 Here comes the directory listing. 226 Transfer done (but failed to open directory). ftp put test.mgz local: test.mgz remote: test.mgz 227 Entering Passive Mode (132,183,202,158,147,226) 150 Ok to send data. 226 File receive OK. 1696595 bytes sent in 0.209 secs (7.9e+03 Kbytes/sec) On Wed, 11 Jul 2012, Borzello, Mia wrote: i saw the instructions, but it doesn't give an e-mail specifically for that and ftp surfer.nmr.mgh.harvard.edu doesn't work. From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:24 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, no, there are instructions on the wiki for uploading your data using either ftp or the filedrop. And no, I think it will be another couple of days Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Will he be back today? Upload it in an e-mail? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 12:21 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] slanted
oh i'm trying to do the e-mail file drop though, that's fine too right? i'm just not sure what e-mail to use for the recipient e-mail. From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:58 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted when you say ftp doesn't work, what do you mean? It works for me: ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu (132.183.202.158). 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php 220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:fischl): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp cd /space/incoming 250 Directory successfully changed. ftp ls 227 Entering Passive Mode (132,183,202,158,147,239) 150 Here comes the directory listing. 226 Transfer done (but failed to open directory). ftp put test.mgz local: test.mgz remote: test.mgz 227 Entering Passive Mode (132,183,202,158,147,226) 150 Ok to send data. 226 File receive OK. 1696595 bytes sent in 0.209 secs (7.9e+03 Kbytes/sec) On Wed, 11 Jul 2012, Borzello, Mia wrote: i saw the instructions, but it doesn't give an e-mail specifically for that and ftp surfer.nmr.mgh.harvard.edu doesn't work. From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:24 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, no, there are instructions on the wiki for uploading your data using either ftp or the filedrop. And no, I think it will be another couple of days Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Will he be back today? Upload it in an e-mail? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 12:21 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] slanted
can i just send it to freesurfer@nmr.mgh.harvard.edu? thanks From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:58 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted when you say ftp doesn't work, what do you mean? It works for me: ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu (132.183.202.158). 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php 220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:fischl): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp cd /space/incoming 250 Directory successfully changed. ftp ls 227 Entering Passive Mode (132,183,202,158,147,239) 150 Here comes the directory listing. 226 Transfer done (but failed to open directory). ftp put test.mgz local: test.mgz remote: test.mgz 227 Entering Passive Mode (132,183,202,158,147,226) 150 Ok to send data. 226 File receive OK. 1696595 bytes sent in 0.209 secs (7.9e+03 Kbytes/sec) On Wed, 11 Jul 2012, Borzello, Mia wrote: i saw the instructions, but it doesn't give an e-mail specifically for that and ftp surfer.nmr.mgh.harvard.edu doesn't work. From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:24 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, no, there are instructions on the wiki for uploading your data using either ftp or the filedrop. And no, I think it will be another couple of days Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Will he be back today? Upload it in an e-mail? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 12:21 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] slanted
No! Do you have a dropbox account? Copy there and send the link to them. - Pedro Paulo de Magalhães Oliveira Junior Netfilter SpeedComm Telecom -- www.netfilter.com.br -- For mobile: http://itunes.apple.com/br/artist/netfilter/id365306441 On Wed, Jul 11, 2012 at 3:39 PM, Borzello, Mia mborze...@partners.orgwrote: can i just send it to freesurfer@nmr.mgh.harvard.edu? thanks From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:58 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted when you say ftp doesn't work, what do you mean? It works for me: ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu (132.183.202.158). 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php 220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:fischl): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp cd /space/incoming 250 Directory successfully changed. ftp ls 227 Entering Passive Mode (132,183,202,158,147,239) 150 Here comes the directory listing. 226 Transfer done (but failed to open directory). ftp put test.mgz local: test.mgz remote: test.mgz 227 Entering Passive Mode (132,183,202,158,147,226) 150 Ok to send data. 226 File receive OK. 1696595 bytes sent in 0.209 secs (7.9e+03 Kbytes/sec) On Wed, 11 Jul 2012, Borzello, Mia wrote: i saw the instructions, but it doesn't give an e-mail specifically for that and ftp surfer.nmr.mgh.harvard.edu doesn't work. From: freesurfer-boun...@nmr.mgh.harvard.edu [ freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [ fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:24 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, no, there are instructions on the wiki for uploading your data using either ftp or the filedrop. And no, I think it will be another couple of days Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Will he be back today? Upload it in an e-mail? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 12:21 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you
Re: [Freesurfer] slanted
oh, you can give mine if you want On Wed, 11 Jul 2012, Borzello, Mia wrote: oh i'm trying to do the e-mail file drop though, that's fine too right? i'm just not sure what e-mail to use for the recipient e-mail. From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:58 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted when you say ftp doesn't work, what do you mean? It works for me: ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu (132.183.202.158). 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php 220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:fischl): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp cd /space/incoming 250 Directory successfully changed. ftp ls 227 Entering Passive Mode (132,183,202,158,147,239) 150 Here comes the directory listing. 226 Transfer done (but failed to open directory). ftp put test.mgz local: test.mgz remote: test.mgz 227 Entering Passive Mode (132,183,202,158,147,226) 150 Ok to send data. 226 File receive OK. 1696595 bytes sent in 0.209 secs (7.9e+03 Kbytes/sec) On Wed, 11 Jul 2012, Borzello, Mia wrote: i saw the instructions, but it doesn't give an e-mail specifically for that and ftp surfer.nmr.mgh.harvard.edu doesn't work. From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:24 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, no, there are instructions on the wiki for uploading your data using either ftp or the filedrop. And no, I think it will be another couple of days Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Will he be back today? Upload it in an e-mail? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 12:21 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] slanted
no! Don't do that - just use mine On Wed, 11 Jul 2012, Borzello, Mia wrote: can i just send it to freesurfer@nmr.mgh.harvard.edu? thanks From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:58 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted when you say ftp doesn't work, what do you mean? It works for me: ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu (132.183.202.158). 220-This is the Martinos Center Anonymous FTP service. Use of this site 220-shows implicit consent to our Acceptable Use Policy outlined at 220-http://www.nmr.mgh.harvard.edu/martinos/userInfo/computer/nmr-aup.php 220- 220-OPERATIONAL NOTE: If, when doing a GET or PUT, you encounter either 220- 220-229 Entering Extended Passive Mode 220- 220- and nothing happens OR 220- 220-229 Entering Extended Passive Mode 220-500 Bad EPRT protocol. 220- 220- try issuing the EPSV command prior to GET or PUT. 220- 220 Name (surfer.nmr.mgh.harvard.edu:fischl): anonymous 331 Please specify the password. Password: 230 Login successful. Remote system type is UNIX. Using binary mode to transfer files. ftp cd /space/incoming 250 Directory successfully changed. ftp ls 227 Entering Passive Mode (132,183,202,158,147,239) 150 Here comes the directory listing. 226 Transfer done (but failed to open directory). ftp put test.mgz local: test.mgz remote: test.mgz 227 Entering Passive Mode (132,183,202,158,147,226) 150 Ok to send data. 226 File receive OK. 1696595 bytes sent in 0.209 secs (7.9e+03 Kbytes/sec) On Wed, 11 Jul 2012, Borzello, Mia wrote: i saw the instructions, but it doesn't give an e-mail specifically for that and ftp surfer.nmr.mgh.harvard.edu doesn't work. From: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 1:24 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, no, there are instructions on the wiki for uploading your data using either ftp or the filedrop. And no, I think it will be another couple of days Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Will he be back today? Upload it in an e-mail? Thanks, m From: Bruce Fischl [fis...@nmr.mgh.harvard.edu] Sent: Wednesday, July 11, 2012 12:21 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] slanted Hi Mia, you'll probably have to wait until Doug is back to get an answer. In the meantime, feel free to upload your data so we can take a look cheers Bruce On Wed, 11 Jul 2012, Borzello, Mia wrote: Hi, I'm not exactly sure what the problem is, but for some reason, this brain is kind of sheered. I'm not sure if it's because of the CT, but on the right side of the picture i attached, it kind of wider on one side. It's alignment isn't right, and using rotate does help. How should I correct this? Thanks, Mia ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
